Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq250 109 6e-19 seq2 95.1 1e-14 seq18 86.0 7e-12 >seq250 Length=49273 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||| ||||| || || | || | || |||||||||||||| ||||| Sbjct 6022 TCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAG 5963 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | ||||||||| |||||| ||| | ||| Sbjct 5962 ATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTTGACTTCA-CGTT 5904 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||| || || |||| ||||| || || || |||| ||| || || Sbjct 5903 GTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGAC 5844 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 5843 AAAGATCTGCAT 5832 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| ||| |||| | || || |||||||| |||||||| Sbjct 5229 TCCTTCTGGATATTGTAGTCGGAGAGACTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 5170 Query 46463 ATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 5169 ATCAGGCGCTGCTGGTCGG 5151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | || || || | ||| |||||| ||||| |||||||| || ||| |||| Sbjct 5821 AAACGGAGGACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGACTGCGA 5762 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || | |||||||||||||| |||||||||||||| || Sbjct 5761 CCGTCCTCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGATC 5718 >seq2 Length=791969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| || |||||| ||||| |||||||| || |||| ||| |||| ||| Sbjct 342653 ACGAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGAGCGTCCGTCCTCG 342712 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || |||||||||||||| ||||| ||||||||||| Sbjct 342713 AGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTC 342747 >seq18 Length=246705 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| |||||||| || |||| || | || || Sbjct 93571 ACGAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAGAGAGAACGACCATCCTCA 93630 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || |||||||| ||||| |||| |||||||||||||| Sbjct 93631 AGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGG 93667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229278465320