Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 215 5e-51 seq366 129 6e-25 seq277 111 2e-19 seq1111 104 2e-17 >seq3 Length=549351 Score = 215 bits (238), Expect = 5e-51 Identities = 531/809 (66%), Gaps = 65/809 (8%) Strand=Plus/Plus Query 132690 GTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTA 132749 ||||||||||||| | | || | |||||||||| | ||| || |||||||||||||| Sbjct 261170 GTTGTAGTGCTTGTCGTTGCCCAAGGCGACGAGCAGGCGGTCAGCAACGAACTCGATGTA 261229 Query 132750 TTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGA 132807 ||| ||||| |||| || | | | || | || ||| || ||||| || || | Sbjct 261230 TTGGCACATGAGTTTTGCGTTCATG-CCAATGAGCGAGCAAGGG-AGCGCATCCGTTAAG 261287 Query 132808 AAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGC 132867 || |||||||| ||||| || ||| | ||| | | ||| | | | | || Sbjct 261288 AACTCCTGCTCGATCGCGACGGCATCGACAATGATCTTGCGTACGACCTCAGGGTGTGGG 261347 Query 132868 CGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTG 132927 || | | || |||| | | ||| || |||||| |||| ||||||||| | | Sbjct 261348 CGCCGGCGAAGGTGGCTGAAAAGGAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGG 261407 Query 132928 GAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 ||||| |||||||||||||| | ||| |||||||| || || || |||||||| || Sbjct 261408 CTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAG 261467 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 ||||| ||||| || || ||||| | ||| |||||||| || || || | || ||| Sbjct 261468 ATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAACGCGATGAGACGC 261527 Query 133048 TCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG 133107 ||| |||| | | ||| | ||||||| | || ||||| |||||||| | || Sbjct 261528 TCGGCGAAGGATGAGCGCTTGTCCGAGATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTA 261587 Query 133108 ACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC---CGAGGAACGC 133164 ||||| || || || || | ||||| || || | | ||| | | || || | Sbjct 261588 ACGCAAGGAATTGTCTCAACGGCGTCGAA--AAGGTA--TTCGCGTTGAGCGGGGTCCTT 261643 Query 133165 -ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG------- 133216 | ||| |||||||||||| ||||||| | || ||||| | ||||||| || Sbjct 261644 GATGTATGTGTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCTCCCTGTAAACCCC 261703 Query 133217 -----------------------------CGA--------------TTTGAAAGCCGTAA 133233 ||| |||| || || || Sbjct 261704 CGTAAGAAGCTGAATAAAGGTGAGTGAAACGAAACTTACATCATAATTTGGAATCCATAG 261763 Query 133234 AAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTG 133293 |||||||| ||||| | | || ||||| | ||| ||||| || || || ||||| Sbjct 261764 AAGCACCGAGCCTCCGCAGCTTGAACTTCGTTGCTGAATCGCTCAACAAGGTTCTCGTTT 261823 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| |||||| || ||||| || || || || || ||| ||| |||||||||||| Sbjct 261824 ACGATACCGTCGGACGCAGCGAAGAACGCAAGAACATGGCTGACGAAGTGGCGCTCGTTG 261883 Query 133354 TCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 ||||| || | || ||||||| | ||||||||| || |||| ||||||| | ||| Sbjct 261884 TCGTTTAACTTGTTCTGCCAGTCGTGGAGGTCCTTGGAAAGATCCATCTCCTCGGCAGTC 261943 Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||| || || || || |||||||| Sbjct 261944 CAGAACGAAGCTTCAGCCTTCTTGTACAT 261972 >seq366 Length=28123 Score = 129 bits (142), Expect = 6e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||||||||||||| || |||||| ||||| |||||||||| |||||||||| |||| Sbjct 25431 TGAACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGC 25372 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||||||| | || ||||| | |||||||| |||||| ||||||| || ||||| || Sbjct 25371 TGAAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGC 25312 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 |||| ||||| ||||| || | | |||||| |||| Sbjct 25311 CCGAGAAGAAATTTCCCTCTACCTCGGAGAAAGCGACCA 25273 >seq277 Length=43962 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 |||||||| ||||||||||| || || || | || || || || ||| | |||| Sbjct 18226 ATTTGAAACCCGTAAAAGCATCGAGCTTCAGCAACTTGAACCTCGCTGCTGAATCTCTCG 18167 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| || |||||||| ||||| || ||||| || || || || ||||| ||||| Sbjct 18166 ACCAAGTTCTCGTTGACTATGCCATCCGATGCGGCAAAGAACGCGAGGACGTGGCTGATG 18107 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || || || |||| ||| |||| || ||| || | | | || ||||| || ||| Sbjct 18106 AAGTGACGTTCGTCATCGCTCAACTTGTCACGCCAATCACCCATATCTTTGGAAAGATCC 18047 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCC 133444 || || || | ||||| || ||||| ||||| || |||||||| |||| Sbjct 18046 ACTTCTTCCGCTGTCCAGAAAGACGCTTCGGCCTTCTTGTACAT-CTCC 17999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 267/411 (65%), Gaps = 0/411 (0%) Strand=Plus/Minus Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779 |||||| | || || ||||||||||||||||| ||||| | |||| | || | Sbjct 18778 GAGCAGACGATCCGCTACGAACTCGATGTATTGGCACATGAGTCGAGAATTCATCCCAAT 18719 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| ||| || | || || || || || |||||||| ||| ||||| | | Sbjct 18718 GAGAGACACGGGTAATGCATCCGTAAGGAATTCCTGCTCGATCAAGACGGCGTCCGCAAT 18659 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 ||| ||| || ||||| || || ||| | | ||| ||| | | || || Sbjct 18658 GATATCCAAAATTGTGGCCGCACTTGGGCGTCGTCGAAGATGACGGAAAAGGAGACACGC 18599 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 || || |||| || ||||| | | || | ||||| || || || | || || Sbjct 18598 GAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAGTCCTGG 18539 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| | || || || || ||||| || ||||| || || ||||| || |||| || Sbjct 18538 CATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAAGATTCC 18479 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 || || || ||||||||||||| || || ||||||| | || | ||||| Sbjct 18478 TTCAACCGCAGCGAAAGCCACCAAACGTTCTCCGAACGACGACCTGGTGTCAGATATCCA 18419 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 || |||||||| |||||||| | || || || || ||||| || || || Sbjct 18418 ACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq1111 Length=1418 Score = 104 bits (114), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || |||||||| || || || || || | | |||||| || | ||| | |||| Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 || ||||| || || || || |||||| || ||||||| || || |||||||||||| Sbjct 816 ACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGATG 875 Query 133339 AAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||||| || || | ||||| | ||| ||| || | | ||||| || || ||| Sbjct 876 AAATGACGTTCTTGATCGTTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAGATCC 935 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 | ||| || | ||||| || ||||| ||||| |||||||| |||| || Sbjct 936 ATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164728461440