Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq21 100 1e-15 >seq21 Length=238599 Score = 100 bits (110), Expect = 1e-15 Identities = 191/279 (68%), Gaps = 13/279 (5%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || |||||||||||||||||||||||||| ||||| |||||||| || || Sbjct 224027 ACCGTCCCTGCATATTTCAATGATGCACAACGGCAAGCGACTAAGGATGCAGGTCAAATA 223968 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||| | | ||| | || | || || || || || ||||| ||||| || ||||| Sbjct 223967 GCTGGTCTGGAGGTTTTACGCGTCATCAACGAGCCGACTGCAGCCGCTCTGGCGTATGGT 223908 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 ||| | | || | ||| ||| | ||| |||| |||||| Sbjct 223907 TTAG---------ACCGCGCGGACTCTAGCGTCATTGCAGTCTACGATCTTGGAGGAGGA 223857 Query 451511 ACTCATGATACTTCTGTACTTTC-AATTGAAGATGGG-GTATTTGAAGTAAAGGCAACCA 451568 ||| |||| ||| || | || || || ||| ||| || || || || ||| | || | Sbjct 223856 ACTTTCGATA--TCTCTATTCTCGAAATGCAGAAGGGAGTCTTCGAGGTCAAGTCGACGA 223799 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATG 451607 |||||||||| ||||| || || || || | |||| || Sbjct 223798 ATGGTGATACCCATCTCGGTGGCGAGGACTTCGATATTG 223760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975685719765428