Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq59 223 4e-53 seq138 183 4e-41 seq751 127 3e-24 seq1111 86.0 8e-12 seq32 84.2 3e-11 >seq59 Length=174874 Score = 223 bits (246), Expect = 4e-53 Identities = 261/353 (74%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||||||||| ||||| || |||||||| || || || |||||||| Sbjct 34745 TCGAAGTCTTCACCACCCAAGTGAGTATCACCAGCGGTCGCCTTCACCTCGAAGATACCC 34804 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || ||||| || || || || || || || || ||||| ||| Sbjct 34805 TCCTCAATCGTGAGGAGAGAGACATCGAAGGTTCCTCCTCCGAGATCGAAGATGAGGACG 34864 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | ||||| |||||||| || ||||| || || || || || || Sbjct 34865 TTGCGCTCGCCGGTGGTCTTCTTGTCGAGACCATAGGCGATGGCGGCAGCAGTGGGCTCG 34924 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || ||||| || || | || || || || ||||| || Sbjct 34925 TTGATGATACGGAGGACGTTGAGACCAGCGATCTTTCCTGCGTCCTTGGTGGCTTGACGC 34984 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||||| |||| | | ||||| Sbjct 34985 TGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTCCTTGACGGTGGTGCCGAGG 35044 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || |||||| | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 35045 TAGGACTCCGCGGTCTCCTTCATCTTGGTGAGGACCATAGATGAGATCTCTTC 35097 Score = 168 bits (186), Expect = 8e-37 Identities = 277/397 (70%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| ||||| |||||||||||||| Sbjct 34239 TCACCGGAGAGGATGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCATCGGGGTTG 34298 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACA-TTTGTTGAATTTTCGG 7128 |||| || || | || || ||||| || | ||||| | | ||| | || || || Sbjct 34299 ATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCCGAAACGAGCTTGACG-ATCTTGGG 34357 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || |||||||| | ||||| || | || || || || |||||||| || Sbjct 34358 GATACGAGTAGAGCCACCGACGAGGACGATATCGTGGACGTTGGACTTGTCGATCTTGGA 34417 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 ||| ||||| || |||||||| || | | | ||||| | ||| || || || Sbjct 34418 GTCGCGAAGGACCTTCTCGACAGGCTCAAGAGTGCTGCGGAAGAGATCCTGGCAGAGCTC 34477 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || ||||| || | ||| || ||||| || | || ||| | | ||||| || Sbjct 34478 CTCGAAGCGAGCACGTGTGAGGGAAGTGTAGAAGTCGATACCCTCGAACAGGGAATCGAT 34537 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | || || | || ||||| || ||||| || || || || Sbjct 34538 CTCGATGGTGGTCTGGGCTGCGGAGGACAGGGTACGCTTGGCACGCTCGCAAGCGGTGCG 34597 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 | ||||||||| || || | ||| ||| | |||| Sbjct 34598 GAGACGACGAAGTGCGCGAGCGTTGGTGGACAGATCT 34634 Score = 150 bits (166), Expect = 2e-31 Identities = 147/189 (78%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||||| ||||| ||||| || || || ||||| | ||||||||||| || Sbjct 35277 AACTTGCGACCGATGAGACGTTTTGCGTCGAAGACCGTGTTGTGAGGGTTCATGGCGATT 35336 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 ||||||||||| ||||| ||||| ||||| || || || | |||| ||| || || Sbjct 35337 TGGTTCTTCGCGGCGTCACCGATGAGACGCTC---GTTGTCGGAGAACGAGACATAGGAG 35393 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 |||||||| || || || |||||||| ||||| || || || || ||||||||||| || Sbjct 35394 GGGGTCGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCAACACGATCGTTTTGCCACACA 35453 Query 8108 CCGACGCAC 8116 ||||||||| Sbjct 35454 CCGACGCAC 35462 >seq138 Length=101067 Score = 183 bits (202), Expect = 4e-41 Identities = 325/470 (69%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 ||||| | || | || | ||||||| | || ||||||||||| |||| ||| | ||| Sbjct 72631 GCACGACTGATAGTTGCAGAGAAATCTTCACCCTCGTATAACGAGTCAACTTCGACGGTG 72690 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 ||||| || ||| | |||||||| || || || || || | | | ||||||| Sbjct 72691 GTTTGAGCGACGGAACTGAGAGTTCGCTTAGCACGTTCGCAAGCGCTCCTCAGACGACGA 72750 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 ||||||||||||| || ||||| | ||| || || || ||||| | |||| Sbjct 72751 AGGGCACGCGGGTCCTCGCTGATATCGTGCTTGGTCTTGCGCTTGAACTCGTTCTTGAAG 72810 Query 7439 TGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 || |||||| | ||||| || |||||||| | || || || || || ||||| Sbjct 72811 TGCTCAAGGAGGTTGTTGTCGAAGTCCTCACCACCAAGATGGGTGTCTCCAGCAGTCGCC 72870 Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| | |||| ||| || ||||| | ||| |||||||| || || || ||||| Sbjct 72871 TTGACGGCGAAGACACCACCAGTGATGTTGAGCAAGGAAACATCGAAAGTTCCTCCACCA 72930 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGC 7614 || || |||||||| | || | || ||| | ||| | || || ||||| || || Sbjct 72931 AGATCGAAAATGAGGA----CGAAGCGCTCGGCCTTGGATTGATTGTCAAGACCATAAGC 72986 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG- 7673 |||||| || || ||||| || || |||||||| ||| | |||||||| || ||| Sbjct 72987 GATAGCAGCGGCTGTTGGCTCGTTGATAATACGGAGAACCTCAAGGCCAGCGAT--TTGA 73044 Query 7674 -CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | ||||| || || || | || || || ||||| ||||| || ||||| Sbjct 73045 CCAGCATCCTTTGTAGCGAGACGCTGAGAGTCGTTGAAGTATGCAGGGAC 73094 >seq751 Length=5126 Score = 127 bits (140), Expect = 3e-24 Identities = 248/364 (68%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| ||||| ||||||||||| || || | || || | || || ||||| || | | Sbjct 2369 CGTACGCGACGGCCTCATCGGGATTGATTGACTTGTTGGGCTCCTTGCCGTTGAAGAAGT 2428 Query 7104 CCGATAACA-TTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 |||| | | ||| | || || ||||| || || || |||||||| | ||||| || Sbjct 2429 CCGAAACGAGCTTGACG-ATCTTGGGGATACGAGTGGAGCCACCGACGAGGACGATATCG 2487 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | || || || || |||||||| ||||| || || || |||||||| || | | Sbjct 2488 TGGACGTTGGACTTGTCGATCTTGGAGTCGCGGAGGACCTTCTCGACAGGCTCAAGAGTG 2547 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 | ||||| | ||| || || ||||| || || ||||| || | ||| || ||||| Sbjct 2548 CTGCGGAAGAGATCCTGGCAAAGCTCCTCGAAGCGAGCACGAGTGAGGGAGGTGTAGAAG 2607 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || ||| | | || || || || ||||| || | || | || || | || Sbjct 2608 TCGATACCCTCGAACAGGGAGTCGATCTCGATGGTGGTCTCGGCGGCGGAGGACAGGGTA 2667 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || ||||| || || || | | ||||||||| ||||| | ||| ||| | | Sbjct 2668 CGCTTGGCACGCTCGCAAGCGGTACAGAGACGACGAAGAGCACGAGCGTTGGTGGACAGA 2727 Query 7403 TCTT 7406 |||| Sbjct 2728 TCTT 2731 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/173 (73%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || |||||||||||||| || || || || || || || || ||||| |||||||| Sbjct 2842 TCAAAGTCTTCACCACCCAAATGGGTGTCACCAGCAGTTGCCTTCACTTCGAAGATACCC 2901 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || ||||| || || || || || || || || ||||| ||| Sbjct 2902 TCCTCAATCGTGAGGAGAGAGACATCGAAAGTTCCTCCTCCGAGATCGAAGATGAGGACG 2961 Query 7577 TT-CG-TATC--GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCG 7625 || || | || || ||| ||||| ||||||||||| ||||||| | ||| Sbjct 2962 TTGCGCTCTCCGGTGGTC----TTCTTGTCGAGACCGTAAGCGATAGTCCCCG 3010 >seq1111 Length=1418 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 115363 TGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCT 115422 ||||| || ||||||||||| ||||||||||| ||||| | ||||| | | || Sbjct 392 TGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGTCCTGGCATAAGTCCC 451 Query 115423 CTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACAC 115482 | ||||||| ||| || || || ||| ||||||||||| || ||||| ||| | Sbjct 452 CGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAAATTCCTTCGACAGCC 511 Query 115483 GCAAAGGCTAATAAACGTTCAGCAAATGGTCG-TTTCTTATC---AAACCACTTCATAGC 115538 ||||| || | | ||||||||| || |||| || || || || ||| | || Sbjct 512 GCAAACGCGACGAGACGTTCAGCGAA-AGTCGATTCCTCGTCCGAAATCCATCGAAGTGC 570 Query 115539 CCATTTCGCCTTTCTTT 115555 ||||| |||||||||| Sbjct 571 CCATTCAGCCTTTCTTT 587 >seq32 Length=220044 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/259 (68%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||| | || || || || ||||| || ||||| || | ||| Sbjct 110628 TCGAAATCTTCACCACCGAGATGGGTGTCACCGGCGGTTGCGAGAACTTCGAAAACACCA 110687 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA---GGTCAAAAATGAGT 7573 | ||||| | | ||||||||| || || || || |||| || | ||||| | Sbjct 110688 TCGTCAATCGAGAGAAGCGAAACATCGAAGGTTCCTCCTCCCAAATCGTAGACAATGA-T 110746 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | ||| | ||||| || |||||||| |||||||| || || || ||| Sbjct 110747 ACG-----AGATTCGCCACCCTTCTTGTCAAGACCGTAGGCGATAGCGGCAGCGGTAGGT 110801 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||||| ||| | ||||| ||||| || | || || || || || || Sbjct 110802 TCGTTGACGATACGGAGAACCTGGAGGCCGGCAATTGTACCTGCGTCCTTGGTAGCCTGG 110861 Query 7694 CGTTGCGAATCGTTAAAGT 7712 || || | ||||| |||| Sbjct 110862 CGCTGAGCGTCGTTGAAGT 110880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122550544440