Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 >seq3 Length=549351 Score = 111 bits (122), Expect = 2e-19 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||||| || ||||||||||| |||| ||||| ||||| ||||| Sbjct 261410 GATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGAT 261469 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 |||| || |||||| ||||| ||||| || || ||| || |||| |||||||| Sbjct 261470 GGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAACGCGATGAGACGCTC 261529 Query 119648 AGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTA 119703 || |||| ||| |||||| || ||| | ||||||||||| |||||| || | Sbjct 261530 GGC-GAAGGATGAGCGCTTGTCCGAGATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAA 261588 Query 119704 TGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| || | || | | ||| |||||||| Sbjct 261589 CGCAAGGAATTGTCTCAACGGCGTCGAAAAG 261619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966495399800