Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq250 147 5e-30 >seq250 Length=49273 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || |||||||| || || | ||| ||| ||||| ||| Sbjct 6040 ACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCG 5981 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| ||||| ||||| || Sbjct 5980 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 5921 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||| ||||| |||||||| || || || | || | |||||| Sbjct 5920 ATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTC 5861 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || || || | ||||| Sbjct 5860 CCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| |||||||| ||||| || || |||| ||| | ||||| ||| Sbjct 2114 ACAAGGTGCAGAGTCGACTCTTTCTGAATGTTATAGTCGGAAAGCTGGCGACCATCCTCG 2055 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || || ||||| || ||||| ||||| ||||| |||| Sbjct 2054 AGCTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCGGGAGGGATGC 2009 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| ||||||||||| |||||||| || |||| ||| | ||||| || Sbjct 2687 AACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGAAAGTTGGCGTCCATCCTC 2628 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 ||| ||||| || |||||||| || ||||||||||| || || || Sbjct 2627 GAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGTGGTAT 2583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109463248134197