Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1111 125 8e-24 >seq1111 Length=1418 Score = 125 bits (138), Expect = 8e-24 Identities = 232/339 (68%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 |||||| | ||| | | || || ||||| ||| | |||||| |||| ||| || | Sbjct 358 AAGATGATGAAATAGAAGGCAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAG 417 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 |||||| ||| || | || ||||| ||||| | |||||||| |||||| || | || Sbjct 418 TTCATTGCTAAACGTGAGTCCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGC 477 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 || || || || ||||| || ||||| || || ||||| || || || | ||| | | Sbjct 478 GAAAGACCCCGAGAAGAAAATTCCTTCGACAGCCGCAAACGCGACGAGACGTTCAGCGAA 537 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | | | || | | ||||||| |||||||| |||||||| |||| || |||| Sbjct 538 AGTCGATTCCTCGTCCGAAATCCATCGAAGTGCCCATTCAGCCTTTCTTTTAACGCATGA 597 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTA---TCTTTAACATATGC 19238 | ||||||||||| |||||| | || |||||| |||| || |||||| Sbjct 598 TACTGTCTCTATAGCTGAGAATAGACGCGCCCG---TTCTGTATTTTCTTGAATATATGC 654 Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTC 19277 ||| | | | |||| |||| ||||| |||||||| Sbjct 655 ATCAAGGAGAAGCGAGTACGTTTCCGAATGGATATTTTC 693 Score = 114 bits (126), Expect = 1e-20 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||| || ||||| ||||| | |||||||| ||||| || || ||||| || || ||| Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || | ||| ||||| ||||| || || || | ||||| || | || || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGATG 875 Query 19405 AAATG---TTTTTCATC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAAT 19459 ||||| || || ||| |||| ||| || | |||||| ||||| || || | || Sbjct 876 AAATGACGTTCTTGATCGTTGAGTTTA-TGC-TGCCAATCCGCCATATCCTTCGAAAGAT 933 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 | | ||||| ||||||| || ||||||||||| || |||||||||||||| Sbjct 934 CCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099728969240