Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 217 3e-51 seq277 150 3e-31 >seq3 Length=549351 Score = 217 bits (240), Expect = 3e-51 Identities = 304/417 (73%), Gaps = 11/417 (3%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 |||||| | || || ||| |||||||||||| ||||||| | ||||||||| ||| Sbjct 261201 AGCAGGCGGTCAGCAACGAACTCGATGTATTGGCACATGAGTTTTGCGTTCATGCCAATG 261260 Query 48014 AGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || || || ||| | || | || | ||||||| ||| ||| ||||| || || Sbjct 261261 AGCGAGCAAGGG-AGCGCATCCGTTAAGAACTCCTGCTCGATCGCGACGGCATCG---AC 261316 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCT--TGGCATAGA-GCAT 48129 ||| ||| || ||| || ||||| || |||| || | |||| | | | | Sbjct 261317 AATGATCTTG-CGTACGAC-CTCAGGGTGTGG-GCGCCGGCGAAGGTGGCTGAAAAGGAG 261373 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||| ||| Sbjct 261374 GCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAG 261433 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| ||| | || ||||||||||| || || ||||| || ||||||||||| Sbjct 261434 GCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAA 261493 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||||| || || || || |||||| |||| | ||| |||| || | | |||||| || Sbjct 261494 AATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGA 261553 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| || |||||||| ||||||||||| | ||| || || ||||| | ||| Sbjct 261554 GATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGC 261610 >seq277 Length=43962 Score = 150 bits (166), Expect = 3e-31 Identities = 289/419 (69%), Gaps = 13/419 (3%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGG-GTGATGTTCATGCCTAT 48012 ||||| ||||||| ||| |||||||||||| ||||||| | || ||||| || || Sbjct 18777 AGCAGACGATCCGCTACGAACTCGATGTATTGGCACATGAGTCGAGAA-TTCATCCCAAT 18719 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| |||||||| || || | || || || |||| ||| ||| ||||| ||| | | Sbjct 18718 GAGAGACACGGGTAATGCATCCGTAAGGAATTCCTGCTCGATCAAGACGGCGTCCGCAAT 18659 Query 48073 AATCTGCTTAAC----GCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128 || | | || || | ||| || | || || || || || | | ||| Sbjct 18658 GATATCCAAAATTGTGGCCGCACT-TGGGCGTC-GT--CGAAGATGACGGAAAAGGAGA- 18604 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 || || || ||| |||||| |||||||| |||||||| | | |||| ||| || Sbjct 18603 --CACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGA 18546 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 | || ||||| | |||| || || |||||||| || ||||| || || || ||||| | Sbjct 18545 GTCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAA 18486 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| || || || || ||||| || | | |||||||| || | | |||| | Sbjct 18485 AGATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCGAACGACGACCTGGTGTCAG 18426 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | ||||| ||||||||| || ||||||||||| | || || ||||||||||| ||| Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGCC 18367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931517767389440