Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 seq277 98.7 2e-15 seq57 93.3 8e-14 >seq3 Length=549351 Score = 102 bits (112), Expect = 2e-16 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 |||||| || | || ||||| || || || ||||| || ||| || || || || || Sbjct 261530 CGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGC 261471 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC-CAACGAGCTCA 25993 |||||||||||||||| || ||| |||||| || || ||||| ||||||||||| Sbjct 261470 CATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTC-ACTTTCAGCAACGAGCTCA 261412 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 ||||| | |||||||| | |||| || || |||||||| || Sbjct 261411 TCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTCCT 261369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| || || |||||| ||||| ||||| ||||| Sbjct 261981 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCGTTCTGGACTGCCGAGGAGATGGATCTT 261922 Query 25537 GCCAAGGACATGGACGGCTG---GTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| | ||| ||| | || || | | |||||| || || ||| Sbjct 261921 TCCAAGGACCTCCACGACTGGCAGAACAAGTTAAACGACAACGAGCGCCACTTCGTCAGC 261862 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | || | || ||||| || || || || ||||| || |||||||| || ||| || Sbjct 261861 CATGTTCTTGCGTTCTTCGCTGCGTCCGACGGTATCGTAAACGAGAACCTTGTTGAGCGA 261802 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| || ||||| || | |||||| ||| ||||| || ||||| || Sbjct 261801 TTCAGCAACGAAGTTCAAGCTGCGGAGGCTCGGTGCTTCTATGGATTCCAAAT 261749 >seq277 Length=43962 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||| || || || |||| || || ||||| || || || ||||||||| ||||| | Sbjct 18441 CGTTCGGAGAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCT 18500 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||||||||||||||||||| ||| || ||| ||||| || || |||| |||| Sbjct 18501 TTGCGGCCATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACG 18560 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || | |||||| | ||||| || | |||| ||||| || || || || Sbjct 18561 AGTTGATCAGCCGCGACGAAGGGATGCACACGGATTTCGCGTGTCTCCT 18609 >seq57 Length=175691 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/245 (70%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 221358 CCGGACTCCCATCGTACGACTCGTAGGGACCGT--ACAGTTCGGCCTGGGCGCAAGACTG 221415 |||| || || ||||| | ||||||||| || | |||| | || | ||| | || Sbjct 70139 CCGGGCTGCCTTCGTATGTCTCGTAGGGTCCATCGACAG--CAGCAATGTCGCTACT-TG 70083 Query 221416 CGTCA-GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGG 221474 | ||| |||||||||||||||| |||||||||||| | ||| | | ||| | || | Sbjct 70082 CTTCAAGGGCAGCGTGGTAGATCGTCTCAAAGATCTTGACGTTCAAT-TCTCGAGCTTGA 70024 Query 221475 GAGAAGT-GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 | ||| |||||||||||| || | ||| |||||| | |||||| | || ||| Sbjct 70023 GGCGAGTCGAAGGGCATACGAAGGGACATGAAGGTGTCGGCTAATCCCTGGATGCCAATA 69964 Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||||| | ||| | | |||| ||| || || || || || || |||||||| Sbjct 69963 CCGATGGGACGGTGACGCATGTTTGAACGTTTAGCCTCAGGTACTGGGTAGTAGTTGACG 69904 Query 221594 TCGAT 221598 ||||| Sbjct 69903 TCGAT 69899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829810767040