Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq59 192 8e-44 seq138 150 2e-31 seq751 114 2e-20 seq32 104 3e-17 seq250 96.9 5e-15 seq18 91.5 2e-13 seq57 86.0 8e-12 >seq59 Length=174874 Score = 192 bits (212), Expect = 8e-44 Identities = 289/408 (71%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 |||||||| || || |||||||| | | |||||||||||||| ||||| || | | | Sbjct 35100 CCCGAAGAGATCTCATCTATGGTCCTCACCAAGATGAAGGAGACCGCGGAGTCCTACCTC 35041 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | || || || || || || || || || || || ||||||| || || || || Sbjct 35040 GGCACCACCGTCAAGGACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCCCAGCGT 34981 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || || || |||||||| | || || ||||| ||| || | || ||||| || Sbjct 34980 CAAGCCACCAAGGACGCAGGAAAGATCGCTGGTCTCAACGTCCTCCGTATCATCAACGAG 34921 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || |||||||| |||||||| | || || || || Sbjct 34920 CCCACTGCTGCCGCCATCGCCTATGGTCTCGACAAGAAGACCACCGGCGAGCGCAACGTC 34861 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | ||||| |||||||| || || || || |||||||| || |||| ||||| | ||| Sbjct 34860 CTCATCTTCGATCTCGGAGGAGGAACCTTCGATGTCTCTCTCCTCACGATTGAGGAGGGT 34801 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || ||||| || ||||| || |||||||||||||| | ||||||||||| ||||| Sbjct 34800 ATCTTCGAGGTGAAGGCGACCGCTGGTGATACTCACTTGGGTGGTGAAGACTTCGACAAC 34741 Query 195992 CGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAA 196038 || ||| || || || ||| | |||||| || ||||| ||||| Sbjct 34740 CGACTTGTCAACCACTTCGTC-CAGGAGTTCAAGCGTAAGAACAAGAA 34694 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| |||||||| |||||||| ||||| || | || ||||| || ||||| Sbjct 35461 TGCGTCGGTGTGTGGCAAAACGATCGTGTTGAGATCATTGCCAACGACCAGGGCAACCGC 35402 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || || || | || | || || || |||||| | || || ||||| || Sbjct 35401 ACGACCCCCTCCTATGTCTCGTTCTCCGACAACGAGCGTCTCATCGGTGACGCCGCGAAG 35342 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || || | || ||||||||| ||| || ||||| ||||| || ||||| || |||||| Sbjct 35341 AACCAAATCGCCATGAACCCTCACAACACGGTCTTCGACGCAAAACGTCTCATCGGTCGC 35282 Query 195512 AAGTT 195516 ||||| Sbjct 35281 AAGTT 35277 >seq138 Length=101067 Score = 150 bits (166), Expect = 2e-31 Identities = 319/471 (68%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || || || | || |||||||| |||| | || || Sbjct 73094 GTCCCTGCATACTTCAACGACTCTCAGCGTCTCGCTACAAAGGATGCTGGTCAAATCGCT 73035 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || | ||| | |||||||| || |||||||| ||||| || ||||||||||| Sbjct 73034 GGCCTTGAGGTTCTCCGTATTATCAACGAGCCAACAGCCGCTGCTATCGCTTATGGTCTT 72975 Query 195842 GACAAGAA---CAAGGACGA-AGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 ||||| | ||||| ||| | | || | || || ||||| ||||| || || Sbjct 72974 GACAATCAATCCAAGGCCGAGCGCT----TCGTCCTCATTTTCGATCTTGGTGGAGGAAC 72919 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 || ||||| || | ||||| || |||||| | |||| || ||||| |||||||| Sbjct 72918 TTTCGATGTTTCCTTGCTCAACATCACTGGTGGTGTCTTCGCCGTCAAGGCGACTGCTGG 72859 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGT---CATTTGTCTGA 196014 || || ||||| |||||||| || ||||| || | |||| | || || | Sbjct 72858 AGACACCCATCTTGGTGGTGAGGACTTCGA-CAACAAC--CTCCTTGAGCACTTCAAGAA 72802 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCT 196074 |||||| || |||| ||| | ||||| | | || | || |||||||| || Sbjct 72801 CGAGTTCAAGCGCAAGACCAAGCACGATATCAGCGAGGACCCGCGTGCCCTTCGTCGTCT 72742 Query 196075 TAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGA 196134 |||| || || |||||||| || ||||||||| ||| |||||||| | || || Sbjct 72741 GAGGAGCGCTTGCGAACGTGCTAAGCGAACTCTCAGTTCCGTCGCTCAAACCACCGTCGA 72682 Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 |||| ||||| | || || || |||| | ||||||| | ||||| Sbjct 72681 AGTTGACTCGTTATACGAGGGTGAAGATTTCTCTGCAACTATCAGTCGTGC 72631 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 195383 GGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGAT 195442 |||||||| || || ||||| |||||||| ||| | | | || |||||| | || ||| Sbjct 73594 GGAAACCGCACGACACCATCATACGTTGCATTTGCCTCTGAGGAGCGTCTCATCGGCGAT 73535 Query 195443 GCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTT 195502 ||||||||||| ||| |||| |||||||| | || |||||||| ||||| || ||||| Sbjct 73534 GCCGCAAAAAACCAGGCAGCCATGAACCCAAGAAACACTGTCTTCGACGCAAAACGTCTC 73475 Query 195503 ATTGGTCG 195510 |||||||| Sbjct 73474 ATTGGTCG 73467 >seq751 Length=5126 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || ||||| ||||| |||||||| | || ||| || || | ||||| |||||| Sbjct 3002 ATCGCTTACGGTCTCGACAAGAAGACCACCGGAGAGCGCAACGTCCTCATCTTCGATCTC 2943 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 || || || || || |||||||| || |||| ||||| | ||||| |||||||| ||| Sbjct 2942 GGAGGAGGAACTTTCGATGTCTCTCTCCTCACGATTGAGGAGGGTATCTTCGAAGTGAAG 2883 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||||||||| || ||| | ||||||||||| || || Sbjct 2882 GCAACTGCTGGTGACACCCATTTGGGTGGTGAAGACTTTGA 2842 Score = 86.0 bits (94), Expect = 8e-12 Identities = 224/340 (66%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||||||||| || | || || || || |||||||| || || || || || | || Sbjct 2708 GCTCTTCGTCGTCTCTGTACCGCTTGCGAGCGTGCCAAGCGTACCCTGTCCTCCGCCGCC 2649 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 | || | | ||||| || || |||| || || || |||||||| || | | || Sbjct 2648 GAGACCACCATCGAGATCGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCCTCACT 2589 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| || || || ||| | | ||| | || | | | | || ||||| || Sbjct 2588 CGTGCTCGCTTCGAGGAGCTTTGCCAGGATCTCTTCCGCAGCACTCTTGAGCCTGTCGAG 2529 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || || ||| | ||||| || ||||| || || | || || ||||| || || Sbjct 2528 AAGGTCCTCCGCGACTCCAAGATCGACAAGTCCAACGTCCACGATATCGTCCTCGTCGGT 2469 Query 196301 GGATCAACCCGTATTCCGAAGAT--TCAACAGATGCTTTCTAGCTTCTTCAATAATAAAG 196358 || || || ||||| || ||||| ||| || | |||| ||||||||| || | Sbjct 2468 GGCTCCACTCGTATCCCCAAGATCGTCA--AGCTCGTTTCGGACTTCTTCAACGGCAAGG 2411 Query 196359 ATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTA 196398 | ||||| | ||||| || ||||| || || || || Sbjct 2410 AGCCCAACAAGTCAATCAATCCCGATGAGGCCGTCGCGTA 2371 >seq32 Length=220044 Score = 104 bits (114), Expect = 3e-17 Identities = 178/256 (70%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791 |||||| || | || || ||||| || |||||||| | | | ||||| || || | Sbjct 110880 ACTTCAACGACGCTCAGCGCCAGGCTACCAAGGACGCAGGTACAATTGCCGGCCTCCAGG 110821 Query 195792 GTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA 195851 ||| | || |||| ||||| || || || || || || || ||||| |||||||| Sbjct 110820 TTCTCCGTATCGTCAACGAACCTACCGCTGCCGCTATCGCCTACGGTCTTGACAAGAAGG 110761 Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911 | |||| | | |||| ||| ||| | || || || || || ||||| || | Sbjct 110760 GTGGCGAATCTCGTATC--ATTG-TCTACGATTTGGGAGGAGGAACCTTCGATGTTTCGC 110704 Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971 ||||| ||||| | |||| | |||||||| || || || ||||| || ||||| | Sbjct 110703 TTCTCTCGATTGACGATGGTGTTTTCGAAGTTCTCGCAACCGCCGGTGACACCCATCTCG 110644 Query 195972 GTGGTGAAGATTTCGA 195987 |||||||||||||||| Sbjct 110643 GTGGTGAAGATTTCGA 110628 >seq250 Length=49273 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 || || ||||| ||||| || ||||| || ||||||||||||||||| ||||| || | | Sbjct 2296 ATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCAGC 2355 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 || | ||||| ||| | || |||||||| || || |||||||| || | | || ||| Sbjct 2356 CTTTCGGATTATAACATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGTTTGCGTGGT 2415 Query 172087 GGT 172089 ||| Sbjct 2416 GGT 2418 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 171965 GCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTA 172024 |||| || ||||| ||||| || || || || ||||||||||||||||| ||||| || | Sbjct 4856 GCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCA 4915 Query 172025 CCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGG 172084 | | | || |||||| | || |||||||| || || |||||||| || | || || | Sbjct 4916 GCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGTCTGCGCG 4975 Query 172085 GTGGT 172089 ||||| Sbjct 4976 GTGGT 4980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 || || || || || ||||| | |||||||| || || |||||||||||||| || | Sbjct 5425 ATCCCCCCTGACCAACAACGCTTGATTTTTGCCGGCAAGCAGCTTGAAGATGGTCGCAGT 5484 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 || | ||||||||| | || |||||||| ||||| || || || || | ||||| ||| Sbjct 5485 CTGTCAGATTACAACATCCAGAAGGAGTCCACTCTTCATCTCGTGCTCCGTCTTCGTGGT 5544 Query 172087 GGT 172089 ||| Sbjct 5545 GGT 5547 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || ||||| || |||||||||||||| ||||| || Sbjct 1854 ATGCAGATCTTCGTCAAGACGCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCCTCC 1913 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || | || | || | |||||||| ||||||||||| Sbjct 1914 GACACTATAAACAATGTGAAGGAAAAGATTCAGGATAAGGAAGG 1957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || ||||| ||||||||||||||||| ||||| || Sbjct 4696 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACTATCACCCTCGAGGTGGAGTCCTCT 4755 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || || | || |||||| || || ||||| || Sbjct 4756 GACACGATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGG 4799 >seq18 Length=246705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 ||||| ||||| ||||| || || || || ||||| || || ||||| ||||| ||| | Sbjct 93674 ATTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAACTTGAGGATGGTCGTTCT 93615 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 ||| | || |||||| | |||||||||||||| || || || || || | || || ||| Sbjct 93614 CTCTCGGACTACAACATCCAAAAGGAGTCTACCCTCCATCTCGTCCTTCGCCTGCGTGGT 93555 Query 172087 GGTGCAACCGACGAAGAAAA 172106 || | || || || ||||| Sbjct 93554 GGAGGAA-AGAAGAGGAAAA 93536 >seq57 Length=175691 Score = 86.0 bits (94), Expect = 8e-12 Identities = 178/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 77944 GGAGACACCTCAATACTTATTCATGCGTGTTTCTATTGGTATTCATGGAAATGATATTCC 78003 ||||| ||| || || | | |||||||| |||||||||||||||| || | || Sbjct 68792 GGAGAGACCCCAGCACATGCTTATGCGTGTCGCTATTGGTATTCATGGCCGCGACA-TCG 68850 Query 78004 AGCG-GTACTTGAAACGTATGATAAAATGTCCAATGGTATGTTTATTCACGCAACACCTA 78062 | || | |||| || ||| || |||||| | | | || | ||||||| |||| Sbjct 68851 AACGAGCTATTGAGACCTATAATCTCATGTCCGAGCGCTTCTTCACCCACGCAAGTCCTA 68910 Query 78063 CTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTCCTACT-TGCAAAT 78121 | |||| ||||| || |||||| || |||||| || || ||||| | ||| | Sbjct 68911 CGATGTTCAATGCGGGAACTCCCAACCCCCAGATGAGCTCGTGCTTCCTCGTATGC-ATG 68969 Query 78122 AAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAGTGTGCTCAGATTTCTAAG 78181 ||||| ||| || | || || |||| || |||| | |||||||| |||||| ||| Sbjct 68970 AAGGACGACAGCATCGAGGGGATCTACGACACACTCAAACAGTGTGCTATGATTTCGAAG 69029 Query 78182 TGGGCTGGTGGTATAGGTCT 78201 ||| || ||||| || || Sbjct 69030 ACGGCAGGAGGTATTGGCCT 69049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657851783745520