Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 176 6e-38 seq277 105 8e-17 seq88 86.0 8e-11 seq57 86.0 8e-11 >seq3 Length=549351 Score = 176 bits (194), Expect = 6e-38 Identities = 213/285 (75%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| | |||||||| || | |||||| |||||||| || |||||| Sbjct 261396 CCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTC 261455 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||| ||| || ||||| || ||||| |||||||||||||| Sbjct 261456 TTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAAC 261515 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||||| |||||||| ||| | || || || | |||||| | | |||||| Sbjct 261516 GCGATGAGACGCTCGGCGAAG--GATGA-GCGCTTGTCCGAGATCCAGTGGAGAGCCCAG 261572 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCTTTTC 869418 |||||||| ||| | || | || | || || | |||| ||||| |||| || || Sbjct 261573 TCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGCGTCGAAA-AGGTATTCGCGTTG 261631 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||||||||| || |||||||| ||||||||||| ||||| Sbjct 261632 AGCGGGGTCCTTGATGTATGTGTCGATGAGGAGCGAATACGTCTC 261676 Score = 114 bits (126), Expect = 2e-19 Identities = 130/171 (76%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 868767 ACGGGTTGGGCGTC-TTGTAGTGCTTTTCGCATCCGA--GCGACGCGAGCAGGCGGTCGG 868823 ||||| | || | | ||||||||||| ||| || | |||| ||||||||||||| | Sbjct 261156 ACGGGATTGGTGACGTTGTAGTGCTTGTCGTTGCCCAAGGCGA--CGAGCAGGCGGTCAG 261213 Query 868824 CGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCA 868883 | || ||||||||||| ||||||||||| ||||||||||| ||||||| || | Sbjct 261214 CAACGAACTCGATGTATTGGCACATGAGTTTTGCGTTCATGCCAATGAGCGAGCAAGGGA 261273 Query 868884 GCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||| || | | ||||| | ||||||| ||||||| ||||| ||||||| Sbjct 261274 GCGCATCCGTTAAGAACTCCTGCTCGATCGCGACGGCATCGACAATGATCT 261324 >seq277 Length=43962 Score = 105 bits (116), Expect = 8e-17 Identities = 202/289 (70%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||||| ||||| ||||||| ||| || ||||| | || |||||| Sbjct 18582 CCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAGTCCTGGCATCAATCCCCGCTTC 18523 Query 869240 TTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297 || ||||| |||||||| ||| || |||||||||||||| || || || || || || Sbjct 18522 TTTAGCCAGAAGATGGCCGCA-AAGGAACCCGAGAAAAAGATTCCTTCAACCGCAGCGAA 18464 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGC 869355 |||| | | || || | || ||| | ||| | | ||||| | ||| Sbjct 18463 AGCC-ACCAAACGTTCTCCGAA-----CGACGACCTGGTGTCAGATATCCAACGAAGCGC 18410 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC-CT 869414 ||| |||||||| ||| |||| | || | ||| || || || ||| || || || || Sbjct 18409 CCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGCCGAAAAAAGTTGATCTCT 18350 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || | || |||| |||| |||||| ||||| ||||| ||||| Sbjct 18349 AGTC-TCTTTCTCTTTGATGTAGGAGTCGATGAGGAGAGAATAAGTCTC 18302 >seq88 Length=138146 Score = 86.0 bits (94), Expect = 8e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1254450 ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATG 1254509 ||||| |||| ||||||||||| || ||||| | || | ||||| |||||||||||| Sbjct 131158 ATGCGCTCGAAGATGTCGTTGACGAAGGAGTTGAGGATGGCCATCGCCTTGTTGGAGATA 131217 Query 1254510 CCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || ||||||||| ||||||||||| || |||| Sbjct 131218 CCGGTGTCGGGGTGGACCTGCTTGAGGACTATGTA 131252 >seq57 Length=175691 Score = 86.0 bits (94), Expect = 8e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || || |||| ||| || || | || ||||||||||| ||||||||||| || Sbjct 69047 GCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATCCC 68988 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| |||| |||||||| ||||| |||||||| | || |||| | || Sbjct 68987 CTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCTCATCTGGGGGTTGGGAGT 68928 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 || || ||||| | ||| || | || |||||| || || |||||| Sbjct 68927 TCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATG 68876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107033254494247