Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq250 116 3e-21 seq277 84.2 2e-11 >seq250 Length=49273 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || || | || || || | | Sbjct 5832 ATGCAGATCTTTGTCAAGACGTTGACAGGGAAGACGATCACTTTGGAGGTCGAGTCGTCG 5891 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| |||||||| |||||||| || Sbjct 5892 GACACGATTGACAACGTGAAGTCAAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 5951 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| ||| | | || || ||||| Sbjct 5952 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGACGAAGCCTTTCTGACTATAAT 6011 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||||||||| || ||| Sbjct 6012 ATTCAGAAGGAATCGACGCTCCAC 6035 >seq277 Length=43962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126029 TGGTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAtttttt 126088 |||| ||||||||| || ||||| | |||||||||||| |||||||| || || | Sbjct 18456 TGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCTTTGCGGCCATCTTCT 18515 Query 126089 ttATAAAGACAAAGGGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTG 126148 |||||| ||| | ||||| || || || || || ||||||||||| || | Sbjct 18516 GGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGATCAGCCGCG 18575 Query 126149 ACGAAGGACTCCATACGGACTTTGCATGTCT 126179 ||||||| | || ||||| || || ||||| Sbjct 18576 ACGAAGGGATGCACACGGATTTCGCGTGTCT 18606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890339777480