Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 170 3e-36 seq277 129 9e-24 seq88 87.8 3e-11 >seq3 Length=549351 Score = 170 bits (188), Expect = 3e-36 Identities = 221/301 (73%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | |||||||| || |||||| |||||||| || |||||| Sbjct 261396 CCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTC 261455 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||||| ||| || ||||| || ||||| |||||||||||||| Sbjct 261456 TTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAAC 261515 Query 794461 CCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| ||| |||||||| || | || || || | |||||| | | ||||| Sbjct 261516 GCGATGAGACGCTCGGCGAAGGATG----AGCGCTTGTCCGAGATCCAGTGGAGAGCCCA 261571 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCTTCT 794578 || ||||| ||| | || | || | || || | |||| ||||| |||| || | Sbjct 261572 GTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGCGTCGAAA-AGGTATTCGCGTT 261630 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||||||| ||| ||||||||||||||||| || ||||| ||||||||||| | Sbjct 261631 GAGCGGGGTCCTTGATGTATGTGTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCT 261690 Query 794639 C 794639 | Sbjct 261691 C 261691 Score = 105 bits (116), Expect = 1e-16 Identities = 119/155 (77%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 793991 GTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||| ||| || | |||||| ||||||||||| || ||||| || ||||| Sbjct 261173 GTAGTGCTTGTCGTTGCCCAAGGCGACG--AGCAGGCGGTCAGCAACGAACTCGATGTAT 261230 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCG-CCACGGGCAGCGACTCGCTGACAAA 794107 ||||||||||| ||||||||||| ||||||| || ||| |||| || | | || Sbjct 261231 TGGCACATGAGTTTTGCGTTCATGCCAATGAGCGAGCAAGGG-AGCGCATCCGTTAAGAA 261289 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| | ||||||| ||||||| |||| ||||||| Sbjct 261290 CTCCTGCTCGATCGCGACGGCATCGACAATGATCT 261324 >seq277 Length=43962 Score = 129 bits (142), Expect = 9e-24 Identities = 219/307 (71%), Gaps = 19/307 (6%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| |||||||| ||||| |||||| ||| || ||||| | || |||||| Sbjct 18582 CCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAGTCCTGGCATCAATCCCCGCTTC 18523 Query 794401 TTGAGCCAAAAGATGGC---ACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC- 794456 || ||||| |||||||| | || ||| ||||||||||||| || || || || || Sbjct 18522 TTTAGCCAGAAGATGGCCGCAAAGGAAC---CCGAGAAAAAGATTCCTTCAACCGCAGCG 18466 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515 |||||| || | || || | || | | || || | | | | ||||| | || Sbjct 18465 AAAGCC-ACCAAACGTTCTCCGAACGACGACCTGG---TGTCAGAT-ATCCAACGAAGCG 18411 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC-C 794574 ||||||| ||||| ||| |||| | || | ||| || || || ||| || || || | Sbjct 18410 CCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGCCGAAAAAAGTTGATCTC 18351 Query 794575 T--TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632 | |||| | || |||| ||||| |||||||||||| || || ||||| ||||| | Sbjct 18350 TAGTCTCTTTC---TCTTTGATGTAGGAGTCGATGAGGAGAGAATAAGTCTCGGAGTGTA 18294 Query 794633 TGTTTTC 794639 |||| || Sbjct 18293 TGTTCTC 18287 >seq88 Length=138146 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1485616 ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATG 1485675 ||||| |||| ||||||||||| || ||||| | ||| | ||||| ||||||||||| Sbjct 131158 ATGCGCTCGAAGATGTCGTTGACGAAGGAGTTGAGGATGGCCATCGCCTTGTTGGAGATA 131217 Query 1485676 CCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAG 1485717 || ||||||||| ||||||||||| || ||| |||||| Sbjct 131218 CCGGTGTCGGGGTGGACCTGCTTGAGGACTATGT--ACAAAG 131257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916109070441749