Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq250 107 1e-18 >seq250 Length=49273 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||| |||||||| || ||||| || |||| Sbjct 6043 AGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCC 5984 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 5983 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 5924 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | |||| || | |||||| || | || || ||| Sbjct 5923 TGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTC 5864 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| |||||||||||||| Sbjct 5863 TTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||| |||||||| |||||||| || || ||| |||| Sbjct 2689 AGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGAAAGTTGGCGTCCATCC 2630 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||||||||||||||||||| || ||||| ||||| Sbjct 2629 TCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTC 2592 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||||||||||||| || || ||| |||| Sbjct 2978 AGGACAAGGTGTAGAGTCGACTCCTTCTGAATGTTATAGTCGGAAAGTTGGCGACCATCC 2919 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||||||||||||||||||| || || || ||||| Sbjct 2918 TCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTC 2881 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | ||| | ||||| ||||| | || ||| ||||||||||||||||| | Sbjct 2134 TTCCACCACGCAAACGGAGGACAAGGTGCAGAGTCGACTCTTTCTGAATGTTATAGTCGG 2075 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 | || ||| |||| || || |||||||| || ||||| || ||||||||||| Sbjct 2074 AAAGCTGGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGGTC 2020 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||| || || ||||| || || ||||| |||| Sbjct 5250 AGGACGAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGACTGCGGCCATCC 5191 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || |||||||||||||||||||| || |||||||| Sbjct 5190 TCAAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTC 5153 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| ||||| || || ||||| | || Sbjct 5815 AGGACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGACTGCGACCGTCC 5756 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 |||| |||||| ||||||||||||| || ||||| || Sbjct 5755 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGATC 5718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687675529129