Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq250 113 4e-20 seq3 107 2e-18 seq57 100 3e-16 >seq250 Length=49273 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | ||||| ||||||||||||||||| || ||||||||| Sbjct 5986 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTG 5927 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||| | | |||| |||||| | | ||| || || | |||| Sbjct 5926 TCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATC 5867 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| || || || || |||||||| Sbjct 5866 GTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 >seq3 Length=549351 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||||| ||||||||| || || ||||||||||| || || Sbjct 261372 AGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTG 261431 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||||| ||| | |||||| |||| ||||| || ||| || || ||| Sbjct 261432 AGGCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAG 261491 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||| || ||| |||||| |||| | |||||||| || | | |||| Sbjct 261492 AAAATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCC 261551 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 |||||| | | ||||| |||||||| || Sbjct 261552 GAGATCCAGTGGAGAGCCCAGTCGGCCTTCTT 261583 >seq57 Length=175691 Score = 100 bits (110), Expect = 3e-16 Identities = 205/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 |||||| ||||||||||||||| ||||||| | || |||||||||| ||| || || Sbjct 68996 GTAGATCCCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCTCATCTGGGG 68937 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 | || || || |||||| || || || ||||| || || | || | ||| Sbjct 68936 GTTGGGAGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACAT 68877 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650 | | || | ||| | | || || ||||| |||||| || || || ||||| || Sbjct 68876 GAGATTATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACG 68817 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT 149710 ||| ||||| ||||| |||| |||||| | |||| ||| || | | |||| Sbjct 68816 CATAAGCATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACG 68757 Query 149711 TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGC 149770 || || |||||| | || ||||| | ||| | ||||| ||| ||| | || |||| Sbjct 68756 CTCGAGAGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGATCGCGGA 68697 Query 149771 GTCGA 149775 |||| Sbjct 68696 ATCGA 68692 Score = 86.0 bits (94), Expect = 6e-12 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 148327 ACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCG 148386 |||||||||| || | ||||| |||| || || ||||| ||| || || |||| Sbjct 70304 ACTCGTTGTTACCGAGGATCTGGCTTGTCGAAGCAGTTGGCATAGGCGCGACGAGTAGCG 70245 Query 148387 AGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCG 148446 |||| |||||||| | || ||| ||| || | | |||||||||||| | | Sbjct 70244 AGTTTCGCAAACCAGTCTGCGCGATCTTGGCCTTGAGCGAAGACCAGTCCCAGAGAGAAG 70185 Query 148447 ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGT 148506 | ||| |||| ||||| |||||||| | |||| | || || |||||||| |||| Sbjct 70184 AGGGTTCCACGCCCCACAAATCGTACTGTAACTTGCCCTGACTTGCCGGGCTGCCTTCGT 70125 Query 148507 ACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGT 148566 | | ||| ||||| | | || || | |||| || || || || || ||| || Sbjct 70124 ATGTCTCGTAGGGTCCATCGACAGCAGCAATGTCGCTACTTGCTTCAAGGGCAGCGTGGT 70065 Query 148567 AAATCGTCTC 148576 | |||||||| Sbjct 70064 AGATCGTCTC 70055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412998796840