Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq250 91.5 3e-13 >seq250 Length=49273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||| | ||||| || |||||||||||||| || || || ||| Sbjct 5835 CAGATCTTTGTCAAGACGTTGACAGGGAAGACGATCACTTTGGAGGTCGAGTCGTCGGAC 5894 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || ||||||||| || ||| || Sbjct 5895 ACGATTGACAACGTGAAGTCAAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAG 5954 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGA--AGGACTTTGGCCGATTACAACG 206350 | || |||||||| || |||||| | || |||||| | | |||| | || || || Sbjct 5955 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGACGAAGCCTTT--CTGACTATAATA 6012 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | ||||| || || || || |||||||| Sbjct 6013 TTCAGAAGGAATCGACGCTCCACCTTGT 6040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/95 (81%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC--CTTCCATCT 204820 ||| || ||||| || ||||||||||| | ||||||||| | ||||| | |||||| Sbjct 2687 AACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGG--AAAGTTGGCGTCCATCC 2630 Query 204821 TCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || || ||||||||||||||||| || |||||||| Sbjct 2629 TCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181801251576011