Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-31 seq277 96.9 5e-14 >seq3 Length=549351 Score = 154 bits (170), Expect = 2e-31 Identities = 217/297 (73%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || || || |||||||| |||||||| ||| |||||||||| | Sbjct 261691 GAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCT 261632 Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 | || |||| ||||| |||| | || || | || | || | ||| |||||||| Sbjct 261631 CAACGCGAATACCT-TTTCGACGCCGTTGAGACAATTCCTTGCGTTAAGAAGAAGGCCGA 261573 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||| | | |||||| | || | ||| | ||| |||||||| ||| ||| Sbjct 261572 CTGGGCTCTCCACTGGATCTCGGACAAGCG-CTC-ATCCTTCGCCGAGCGTCTCATCGCG 261515 Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||||| |||||| ||||| || ||||| || ||| |||||||| ||||||||| Sbjct 261514 TTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAG 261455 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || |||||||| || | || || |||||||| | ||||| || ||||| Sbjct 261454 AAGCGAGGGCTCATGCCTGG-CCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGA 261399 Score = 93.3 bits (102), Expect = 6e-13 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 ||||||| ||||| ||||||| ||||||| | ||||| | | || |||| || Sbjct 261324 AGATCATTGTCGATGCCGTCGCGATCGAGCAGGAGTTCTTAACGGATGCGCTCCCTTGCT 261265 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||||||| |||||||||| || ||||||||||| ||||| | | || || || ||||| Sbjct 261264 CGCTCATTGGCATGAACG-CAAAACTCATGTGCCAATACATCG-AGTTCGTTGCTGACCG 261207 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTAC 1456675 |||||||| || | ||| | || ||||||||| Sbjct 261206 CCTGCTCGTCGCCTTGGGCAAC-GACAAGCACTAC 261173 >seq277 Length=43962 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||||| |||||| || |||||||| || || || ||||| || || || || || | Sbjct 17993 GATATGGGAGATGTAC-AAGAAGGCCGAAGCGTCTTTCTGGACAGCGGAAGAAGTGGATC 18051 Query 1455835 TCGGCGCCGACACGGTCCACTGG-GTGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | || | ||| ||| | | ||||||| ||||| || || ||||||| Sbjct 18052 TTTCCAAAGATATGGGTGATTGGCGTGACAAGTTGAGCGATGACGAACGTCACTTCATCA 18111 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| || ||| ||||| |||||||| || ||||||| ||| || Sbjct 18112 GCCACGTCCTCGCGTTCTTT-GCCGCATCGGATGGCATAGTCAACGAGAACTTGGTCGAG 18170 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || | | ||||| ||| | | || || || | ||||||||||| || || Sbjct 18171 AGATTCAGCAGCGAGGTTCAAGTTGCTGAAGCTCGATGCTTTTACGGGTTTCAAAT 18226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177686680677142