Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq57 123 3e-23 seq3 111 2e-19 seq1111 87.8 2e-12 >seq57 Length=175691 Score = 123 bits (136), Expect = 3e-23 Identities = 245/358 (68%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 || || || ||||||||| | || || || | |||||| |||| | |||||| || || Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 69931 CCCTCTATGCTATCATCTATCATGT-TAAGAAGAAA-AC-AGCTAGACATTTGATGATGT 69987 ||||| ||||| || || ||||| || || ||| || |||| ||| || | | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCT---CATCTGGGGGTTG 68933 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 |||||||||||| || | |||||| |||||| ||||| | || || | ||| Sbjct 68932 GGAGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGA 68873 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATC 70107 || || || ||||||||| ||| || || | |||||| || || ||||||||||| Sbjct 68872 TTATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATA 68813 Query 70108 AACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 | ||| ||||| |||| || | |||| || || ||||| ||||| || || Sbjct 68812 AGCATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCG 68753 Query 70168 AGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225 ||||| || || || || || | ||| ||||| | ||||| || || | |||| Sbjct 68752 AGAGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGATCGCGGAAT 68695 >seq3 Length=549351 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || | |||||| || | || || | ||||| || ||||| Sbjct 261374 GCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAG 261433 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || ||||| |||||||| || |||||||| || |||||||| ||||| Sbjct 261434 GCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAA 261493 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793 |||||||| || || ||||| || | || | ||| || | || | | | ||| Sbjct 261494 AATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATG-AGCGCT-TGTCC 261551 Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 ||||| | | ||||| || || |||||||| || ||||| ||||| || Sbjct 261552 GAGATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTC 261604 >seq1111 Length=1418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||| || ||||| ||||| | |||||| | || || ||||| ||| || || || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | | ||| ||||||||||| || || || | ||||| || | || || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGATG 875 Query 40058 AAATA---TTTTTCATCGGGTGTCAATTTATTC---CAGTCATTGATATCTTTTGATATA 40111 |||| || || |||| | | ||||| | || || ||||| || || | | Sbjct 876 AAATGACGTTCTTGATCGT---TGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAGA 932 Query 40112 TCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || | ||||| |||||||| || |||||||| || ||||||||||||||||| Sbjct 933 TCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897715009240