Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1111 109 4e-19 seq3 86.0 5e-12 seq277 82.4 6e-11 >seq1111 Length=1418 Score = 109 bits (120), Expect = 4e-19 Identities = 223/326 (68%), Gaps = 19/326 (6%) Strand=Plus/Minus Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG---- 44022 |||||||| |||||||||| |||| ||||| | ||| | || || |||| Sbjct 693 GAAAATATCCATTCGGAAACGTACTCGCTTCTCCTTGATGCATATATTCAAGAAAATACA 634 Query 44023 GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG 44081 | ||| | || || ||| | || ||||| |||||| | |||| | ||| | || | Sbjct 633 GAACGGGC-GCGTCTATTCTCA---GCTATAGAGACAGTATCATGCGTTAAAAGA-AAGG 579 Query 44082 CAGACTGGGCCCTTAAATGGATAAATTCAAATGATT------CTTTTGGAGAACGACTTG 44135 | || ||||| ||| |||||| ||| | || |||| | ||||| || | Sbjct 578 CTGAATGGGCACTTCGATGGAT---TTCGGACGAGGAATCGACTTTCGCTGAACGTCTCG 522 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 |||||||||| | ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 521 TCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCATCTTCTGGC 462 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 |||| ||||| || | ||||| || | |||||| ||||| | || ||||| |||| Sbjct 461 TAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGAACTCATCAGTCGAGATG 402 Query 44256 AAGGCTTACATTGCGATTTTGCTTGC 44281 | || | ||| ||||| |||||| Sbjct 401 AGGGAATGCATACAGATTTCGCTTGC 376 >seq3 Length=549351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 |||||||||| | || |||||||||||||| || ||||| || || ||||| || ||| Sbjct 261519 TCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGC 261460 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGA 44253 | ||||| ||||| | |||||||| | || ||||| || ||| | || || ||||| Sbjct 261459 TCAAGAAGCGAGGGCTCATGCCTGGCCTCAC--TTTCAGCAACGAGCTCATCAGCCGTGA 261402 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||| | || ||| || || ||| Sbjct 261401 CGAGGGCATGCACACCGACTTCGCCTGC 261374 >seq277 Length=43962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || || |||||||| | || || || || | || ||||| || || || || || || Sbjct 18440 TCGTTCGGAGAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCC 18499 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||||||||| || ||| ||||||| || || |||||||| || | || ||| || Sbjct 18500 TTTGCGGCCATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAAC 18559 Query 44237 GAGTTAATAAGTCGTGATGAAGG 44259 ||||| || || || || ||||| Sbjct 18560 GAGTTGATCAGCCGCGACGAAGG 18582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449746402455