Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1111 105 2e-17 seq3 95.1 4e-14 seq277 93.3 1e-13 >seq1111 Length=1418 Score = 105 bits (116), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| || || || ||||| ||||| | ||||||||| | || || ||| |||| Sbjct 537 TTCGCTGAACGTCTCGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCT-CGGGGTCTTT 479 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || ||||||||||| | ||||| || |||||||||| || || || ||||| || || Sbjct 478 CGCAGCCATCTTCTGGCTAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGA 419 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| |||||||| || ||||| ||||| || ||||| || ||||| Sbjct 418 ACTCATCAGTCGAGATGAGGGAATGCATACAGATTTCGCTTGCCTTCT 371 >seq3 Length=549351 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| || |||| ||||| | |||||||| | || || || | | | Sbjct 261536 CTTCGCCGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGG-ATCCT 261478 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || ||||||||||| | || ||||| || || |||| || || || || || |||| Sbjct 261477 TCGCTGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTCACTTTCAGCAACG 261418 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 | || ||||| || |||||||| |||| |||||||||||| || || Sbjct 261417 AGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTCCT 261369 >seq277 Length=43962 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 || ||||| |||| ||| |||||| | || ||| ||| | || || |||||||||| Sbjct 18458 GTGGCTTTCGCTGCGGTTGAAGGAATCTT-TTTCTCGGGTTCCTTTGCGGCCATCTTCTG 18516 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 | | || ||||| ||| | |||| || || |||||||||||||| ||||||| || || Sbjct 18517 GCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGATCAGCCGCGA 18576 Query 443835 CGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| || |||| || ||||| ||||| || Sbjct 18577 CGAAGGGATGCACACGGATTTCGCGTGTCTCCT 18609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588309727433495