Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq70 89.7 6e-13 seq57 84.2 3e-11 >seq3 Length=549351 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || || || ||| | | ||| |||| || || | ||||| || || |||||| | | Sbjct 261619 CTTTTCGACGCCGTTGAGACAATTCCTTGCGTTAAGAAGAAGGCCGACTGGGCTCTCCAC 261560 Query 94774 TGGTT-TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | |||| | | | |||| || ||||| ||| |||| ||||| || || Sbjct 261559 TGGATCTCGGACAAGCGCTCAT-CCTTCGCCGAGCGTCTCATCGCGTTTGCCGCCGTCGA 261501 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 || || ||||||||||| |||||| || || | ||||||||||||||||| ||||| Sbjct 261500 AGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGAGGGCTCAT 261441 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || ||| ||| ||||||||| ||| ||||||||||| Sbjct 261440 GCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGAGGG 261396 >seq70 Length=160523 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 9695 TTTCCC-ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| | || || || || || | ||||| |||||| ||| ||| | ||| Sbjct 19531 TTTCCCGATCGCGTCGATTTCGTCGACGAAGATGATGCACGGTGCATTCTTCTTAGCCGA 19590 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| || || |||||| | ||||||||||||||||||||||| || | | Sbjct 19591 GGCGAAGAGGTCACGCACACGCGAAGGACCCACACCAACAAACATCTCCACGAACTCGGA 19650 Query 9814 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | || ||| | |||||| || || | || || || | ||| ||| ||||| | Sbjct 19651 ACCAGAGACA-GACAAGAAGGGCACGTTCGCCTCTCCAGCCGTCGCTTTGGCCAGAAGCG 19709 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| ||||| || |||| |||| ||||||||| || || |||||||| Sbjct 19710 TCTTACCAGTACCAGGAGGGCCCGAAAGGATGGCACCTCGAGGTATTTTGGCGCC 19764 >seq57 Length=175691 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/227 (68%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 ||||| |||||| | ||| | || ||| | || |||||||| | | | || || || Sbjct 69143 GGGACCAATGGTTATTCAAACGGCATTGTGCCGATGCTTCGAGCCTACGATGCGACCGCT 69202 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || || || | |||| ||| ||||| | ||| || ||||| |||| | ||| Sbjct 69203 CGTTACGTCGACCAAGGTGGTAATAAGCGTCCA---GGAGCTTTCGCAATCTACATGGAG 69259 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| || || | ||||||||||| | ||| ||||| || | || || Sbjct 69260 CCATGGCACGCCGACGTCTTCGAGTTCCTTGACCTTCGTAAGAACCATGGAAAAGAAGAA 69319 Query 104687 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 || || || ||||| |||| ||| || ||||| || || || || Sbjct 69320 GCTCGCGCTCGAGATCTTTTCTACGCGCTATGGATCCCTGACCTTTT 69366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251387628840