Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq250 138 3e-27 seq751 102 2e-16 seq59 102 2e-16 >seq250 Length=49273 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||||||||| | | || ||||| || || || || || || ||||||||||| Sbjct 6065 TTACTGACCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATA 6006 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||||| | |||| ||||| || || || || ||||| ||||| ||||| ||||| || Sbjct 6005 GTCAGAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTC 5946 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||||||||| || ||||| || || | || || || ||||||| || || | Sbjct 5945 GGGAGGAATTCCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGA 5886 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || | || || ||||| |||||||| Sbjct 5885 CTCGACCTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| || | || ||||| || ||||| |||||||| ||||| ||||| || Sbjct 2136 CATTCCACCACGCAAACGGAGGACAAGGTGCAGAGTCGACTCTTTCTGAATGTTATAGTC 2077 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||| || || || |||||||||||||| ||||||||||| || || Sbjct 2076 GGAAAGCTGGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCGGG 2017 Query 140627 AGGAAT 140632 ||| || Sbjct 2016 AGGGAT 2011 Score = 96.9 bits (106), Expect = 1e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| || | || ||||| || || || ||||| || || || |||||||| Sbjct 2421 CATACCACCACGCAAACGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTATAATC 2362 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | | || ||||| ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 2361 CGAAAGGCTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGG 2302 Query 140627 AGGAAT 140632 ||| || Sbjct 2301 AGGGAT 2296 Score = 96.9 bits (106), Expect = 1e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| |||||||| || |||||||| ||||||||||| || Sbjct 2708 CATTCCACCACGCAGACGAAGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTC 2649 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | | || ||||| || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 2648 GGAAAGTTGGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGG 2589 Query 140627 AGGAAT 140632 || || Sbjct 2588 TGGTAT 2583 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||||||||| ||||| || || || || ||||| Sbjct 5550 CATACCACCACGAAGACGGAGCACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATC 5491 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | | || ||||||||||| || || || ||||| || | ||||| || ||||| Sbjct 5490 TGACAGACTGCGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAAGCGTTGTTGGTCAGG 5431 Query 140627 AGGAAT 140632 || || Sbjct 5430 GGGGAT 5425 >seq751 Length=5126 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | || || || ||||| ||||| || || || || |||| ||||| Sbjct 2957 CTCATCTTCGATCTCGGAGGAGGAACTTTCGATGTCTCTCTCCTCACGATTGAGGAGGGT 2898 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || ||||| || |||||||||||||| || ||| | ||||| ||||| ||||| || Sbjct 2897 ATCTTCGAAGTGAAGGCAACTGCTGGTGACACCCATTTGGGTGGTGAAGACTTTGACAAC 2838 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGT 349927 |||||||| || || || | || || |||||| Sbjct 2837 CGTCTCGTCAACCACTTCGTACAGGAGTTCAAGCGT 2802 >seq59 Length=174874 Score = 102 bits (112), Expect = 2e-16 Identities = 260/396 (66%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || ||||| ||||| | || |||||||| | || || | || | Sbjct 35100 CCCGAAGAGATCTCATCTATGGTCCTCACCAAGATGAAGGAGACCGCGGAGTCCTACCTC 35041 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || | || || || | || || || ||||| || || || |||||||| Sbjct 35040 GGCACCACCGTCAAGGACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCCCAGCGT 34981 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | || || || | || || || | || || || || Sbjct 34980 CAAGCCACCAAGGACGCAGGAAAGATCGCTGGTCTCAACGTCCTCCGTATCATCAACGAG 34921 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || || || ||||| || || || | || | || || | Sbjct 34920 CCCACTGCTGCCGCCATCGCCTATGGTCTCGACAAGAAGACCACCGGCGAGCGCAACGTC 34861 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | || || || || || ||||| || || || || |||| ||||| Sbjct 34860 CTCATCTTCGATCTCGGAGGAGGAACCTTCGATGTCTCTCTCCTCACGATTGAGGAGGGT 34801 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || ||||||||||| || | ||||| ||||| || || || Sbjct 34800 ATCTTCGAGGTGAAGGCGACCGCTGGTGATACTCACTTGGGTGGTGAAGACTTCGACAAC 34741 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGT 349927 || || || || || || | || || |||||| Sbjct 34740 CGACTTGTCAACCACTTCGTCCAGGAGTTCAAGCGT 34705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229336271673