Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq57 98.7 1e-15 >seq3 Length=549351 Score = 127 bits (140), Expect = 2e-24 Identities = 209/296 (71%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGG----AAGA 59881 ||||||||||||||||| |||||| | ||||| | | ||||||| || | | | Sbjct 261685 ATCCACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCTCAACGC 261626 Query 59882 GAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAAT 59940 ||| | || ||| ||| | ||||| | || || ||||| | || || || | Sbjct 261625 GAATAC----CTTTTCGACGCCGTTGAGACAATTCCTTGC-GTTAAGAAGAAGGCCGACT 261571 Query 59941 GGGCCATGCAGTGGATGA--GTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997 |||| | || ||||| | | | | |||| || || | |||||||| || |||| Sbjct 261570 GGGCTCTCCACTGGATCTCGGACAAGCGCTCATCCTTCGCCGAGCGTCTCATCGCGTTTG 261511 Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057 | ||| ||||| || ||||||||||| || ||| ||| || ||||||||||| |||| Sbjct 261510 CCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAGAAGC 261451 Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 | || |||||||| ||||| | |||| ||||||||| || ||| ||||||||| Sbjct 261450 GAGGGCTCATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGAGGGC 261395 >seq57 Length=175691 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT-GC 78922 ||||||| ||||| | ||||||| ||| ||| |||| || ||||| |||||||| | Sbjct 69997 CATGAAGGTGTCGGCTAATCCCTGGATGCCAATACCGATGGGACGGTGACGCATGTTTGA 69938 Query 78923 TCTTTCGGGCCGCCTC-GGTC--GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTAC 78979 | || | |||| ||| ||||| |||| ||||| ||||| || ||||| Sbjct 69937 ACGTTTAG----CCTCAGGTACTGGGTAGTAGTTGACGTCGATAACGCGATTGAGGTTGA 69882 Query 78980 GCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGA 79039 | | |||| || || |||| | ||| ||| ||| | | || ||| |||| Sbjct 69881 ATGCTATGACCTTGGTGACGTCGTGGAGTTTCTGGAAGTCATACTCCTTGCCTCGAATGA 69822 Query 79040 AAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCT 79099 | | || ||| || || || |||||||| || || |||||||| || || || Sbjct 69821 AGGAGGGAAGGGCTAGAGACGCGAGGTTGCAGACAGCTGTCTCGTCGGGAGCCGAGTACT 69762 Query 79100 CGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||| || ||||| ||||| ||||||||||| || || | |||| ||| || Sbjct 69761 CGATGATCTCGGTGCATAAATTCGACGACTTGATAGTACCAAGATTCTGCTGATT 69707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 || |||| ||||| || |||||||| |||||||| |||||||||||| || ||| Sbjct 69016 GCACACTGTTTGAGTGTGTCGTAGATCCCCTCGATGCTGTCGTCCTTCATGCATACGAGG 68957 Query 79744 AAGC---AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 |||| |||| |||||| |||||| || || || ||||| | || || | ||| Sbjct 68956 AAGCACGAGCT---CATCTGGGGGTTGGGAGTTCCCGCATTGAACATCGTAGGACTTGCG 68900 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 || |||||||| | | ||| |||| || ||||| | | || || |||| | Sbjct 68899 TGGGTGAAGAAGCGCTCGGACATGAGATTATAGGTCTCAATAGCTCGTTCGATGTCGCGG 68840 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 || || || || | ||||| ||||| | | || |||||| |||| Sbjct 68839 CCATGAATACCAATAGCGACACGCATAAGCATGTGCTGGGGTCTCTC 68793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515948181040