Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1111 102 9e-17 seq57 84.2 2e-11 seq3 84.2 2e-11 >seq1111 Length=1418 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||| || || | |||||| ||||| || || ||||||||||| || || Sbjct 398 CCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGTCCTGGCATAAGTCCCCGTTTT 457 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| |||||||| ||| || || |||||| || ||||||||| |||||| Sbjct 458 TTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAAATTCCTTCGACAGCCGCAAAC 517 Query 74889 GCGACAAGGCGTTGCGCGAA---CGGTGCATCG---GAAGT-CATCCAAGTCTGAGCCCA 74941 ||||| || |||| ||||| || | | ||| ||| | |||| |||| ||||| Sbjct 518 GCGACGAGACGTTCAGCGAAAGTCGATTCCTCGTCCGAAATCCATCGAAGT----GCCCA 573 Query 74942 TTCAGCTTTTCGTTTGAC 74959 |||||| |||| ||| || Sbjct 574 TTCAGCCTTTCTTTTAAC 591 >seq57 Length=175691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || ||||| ||||| || | || | | || || || |||||| |||| |||||| Sbjct 69164 GGCATTGTGCCGATGCTTCGAGCCTACGATGCGACCGCTCGTTACGTCGACCAAGGTGGT 69223 Query 53552 GGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| | ||| | | ||||| |||||| | ||||| |||||||||||| | | || Sbjct 69224 AATAAGCGTCCAGGAG-CTTTCGCAATCTACATGGAGCCATGGCACGCCGACGTCTTCGA 69282 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAG-AGAT-GCGCTGCCGTGACCTGTT- 53667 ||| || || || ||| ||| || || | |||| || | ||||| || || || || Sbjct 69283 GTTCCTTGACCTTCGTAAGAACCATGGAAAAGAAGAAGCTCGCGCT--CGAGATCTTTTC 69340 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTT 53694 ||| || || ||||| || ||||| || Sbjct 69341 TAC-GCGCTATGGATCCCTGACCTTTT 69366 >seq3 Length=549351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||||||||| || || |||||||| | ||| ||||||||| |||||| ||| |||| Sbjct 261432 AGGCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAG 261491 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || ||||||||||| ||||| |||| || || | ||||| Sbjct 261492 AAAATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAA 261535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207169301800