Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq250 185 1e-41 seq1111 114 1e-20 seq47 114 1e-20 seq57 104 3e-17 seq18 100 3e-16 seq717 82.4 9e-11 seq277 82.4 9e-11 >seq250 Length=49273 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||| | || || ||||| || ||| | ||||| ||||| Sbjct 5832 ATGCAGATCTTTGTCAAGACGTTGACAGGGAAGACGATCACTTTGGAGGTCGAGTCGTCG 5891 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || || ||||||||||| ||||||||||| |||||| Sbjct 5892 GACACGATTGACAACGTGAAGTCAAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 5951 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| || | ||| | ||||||||| Sbjct 5952 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGACGAAGCCTTTCTGACTATAAT 6011 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || |||||||| || || || || ||| | |||||||| ||||| || Sbjct 6012 ATTCAGAAGGAATCGACGCTCCACCTTGTCCTTCGTCTTCGTGGTGGTCA 6061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| |||||||||||||| || || |||||||| || || ||||||| ||| | | Sbjct 4858 ATCCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCAGC 4917 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | ||||| || |||| ||||| || || || || || ||| | ||||| |||||| Sbjct 4918 TTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGTCTGCGCGGT 4977 Query 27631 GG 27632 || Sbjct 4978 GG 4979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || || || || || ||||| || ||||||| || | Sbjct 5144 ATCCCACCCGACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCAGT 5203 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| ||| |||| |||||||||||||| ||||| ||| | ||||| || ||| Sbjct 5204 CTCTCCGACTACAATATCCAGAAGGAATCCACTCTCCATCTCGTCCTCCGTCTGCGTGGT 5263 Query 27631 GG 27632 || Sbjct 5264 GG 5265 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||||| ||||||||||||||||| || |||||||| ||| Sbjct 2133 AATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACTATTACACTGGAGGTTGAATCATC 2192 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||| | ||| | |||| || ||| |||||||||| || Sbjct 2193 AGATACCATCGACAATGTCAAGGAAAAGATTAAGGACAAGGAAGG 2237 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| |||||||||||||| || || |||||||| || || ||||||| ||| | | Sbjct 2296 ATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCAGC 2355 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || ||||| |||| ||||| || || || || || ||| | ||| | || ||| Sbjct 2356 CTTTCGGATTATAACATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGTTTGCGTGGT 2415 Query 27631 GG 27632 || Sbjct 2416 GG 2417 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| |||||||||||||| ||||||||||| ||||| | Sbjct 2419 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACTATCACTCTTGAGGTGGAGTCGACT 2478 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| ||| | ||| || |||||||||||||| || Sbjct 2479 GACACTATTGATAATGTCAAGCAGAAGATTCAGGACAAGGAAGG 2522 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || || |||||||| || || ||||| ||||| | Sbjct 4696 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACTATCACCCTCGAGGTGGAGTCCTCT 4755 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| ||| ||||| || || |||||||||||||| Sbjct 4756 GACACGATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGG 4799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| || || | |||||||| || ||||| || || |||| ||| | Sbjct 5425 ATCCCCCCTGACCAACAACGCTTGATTTTTGCCGGCAAGCAGCTTGAAGATGGTCGCAGT 5484 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || |||| || || |||| ||||| |||||||||||||| || | |||||||| ||| Sbjct 5485 CTGTCAGATTACAACATCCAGAAGGAGTCCACTCTTCATCTCGTGCTCCGTCTTCGTGGT 5544 Query 27631 GG 27632 || Sbjct 5545 GG 5546 >seq1111 Length=1418 Score = 114 bits (126), Expect = 1e-20 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 64636 GCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT---G 64692 ||||||||||| ||| | |||| | ||||||||||||||| | || ||||| | Sbjct 612 GCTATAGAGACAGTATCATGCGTTAAAAGAAAGGCTGAATGGGCACTTCGATGGATTTCG 553 Query 64693 AATCGTGGG-TCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTT 64751 | || || ||| | || | | | ||||||| || ||||| ||| ||||||||||| Sbjct 552 GA-CGAGGAATCGACTTTCGCTGAACGTCTCGTCGCGTTTGCGGCTGTCGAAGGAATTTT 494 Query 64752 CTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCT 64811 ||| || ||||| ||| | || |||||||||||||| ||||| || |||||||| || Sbjct 493 CTTCTCGGGGTCTTTCGCAGCCATCTTCTGGCTAAAAAAACGGGGACTTATGCCAGGACT 434 Query 64812 GTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| || || || ||| ||| || ||||| Sbjct 433 CACGTTTAGCAATGAACTCATCAGTCGAGATGAGGG 398 >seq47 Length=188066 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 24723 TTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAG 24782 || || ||||| ||||| || ||| || ||||| |||||||| ||| ||| Sbjct 109659 TTCTACCAGGCCAGTACGTCCGAACTGTACGGTAAGGTAGTCGAGACGCCGCAGAGCGAG 109718 Query 24783 ACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATA 24842 | || || ||||| ||||| || ||||| ||| | | ||| ||| |||||||||||| Sbjct 109719 AAGACGCCGTTTTACCCGCGCAGTCCGTACGGGTGCGCCAAGCTGTACGCGTACTGGATT 109778 Query 24843 ACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCAT 24902 ||| ||||||||| ||||| | || |||| || ||||| || ||| |||||||||| Sbjct 109779 ACCGTGAACTACCGCGAGGCATACGGCGTATACGCCTGCAATGGGATTTTGTTCAACCAC 109838 Query 24903 GAGTCGGAGCGTCGGGGACCTGAATTT-GTTACACGAAAGATTAC 24946 ||| ||| | ||| | || ||| ||||| || |||||||| Sbjct 109839 GAGAGCCCGCGCAGAGGA-CGGACTTTCGTTACGCGTAAGATTAC 109882 >seq57 Length=175691 Score = 104 bits (114), Expect = 3e-17 Identities = 182/262 (69%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 || || || || |||| | ||| |||||| ||||||| | || | || || || || Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 81559 CCCTCGATGCTATCTTTTTTCATG---TCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 ||||||||||| || | |||||| | || ||| | |||| |||||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCT---CATCTGGGGG--T 68935 Query 81616 TTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||| || |||||||||| || || | ||||| |||| | || | ||||| | Sbjct 68934 TGGGAGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGA 68875 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 | | |||||| || | | ||| || ||| || |||||||| ||||| ||||||| Sbjct 68874 GATTATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCA 68815 Query 81734 TAAACATGTACTGGGGCGTCTC 81755 ||| ||||| |||||| |||| Sbjct 68814 TAAGCATGTGCTGGGGTCTCTC 68793 >seq18 Length=246705 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||||||||| || || || ||||| |||||||| ||||||| |||| | Sbjct 93674 ATTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAACTTGAGGATGGTCGTTCT 93615 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||||||||| || || || ||||| ||| | || || || ||| Sbjct 93614 CTCTCGGACTACAACATCCAAAAGGAGTCTACCCTCCATCTCGTCCTTCGCCTGCGTGGT 93555 Query 27631 GGA 27633 ||| Sbjct 93554 GGA 93552 >seq717 Length=5816 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| ||||| || || ||||| || ||||| |||||||||| || | Sbjct 4707 ATCCCACCCGACCAACAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCAGT 4648 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || | ||||| || |||| |||||||||||||| ||||| ||| Sbjct 4647 CTTTCGGACTACAACATCCAGAAGGAATCCACTCTCCATCTCGTC 4603 >seq277 Length=43962 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 64635 GGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAA 64694 ||| |||||||| | || ||| | || ||||| || ||||| | || ||||| | Sbjct 18367 GGCGATAGAGACGATCCCTTGTGTGAAGAAGAAGGCCGAGTGGGCGCTTCGTTGGAT--A 18424 Query 64695 TCGTG------GGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAAT 64748 || || |||||||||| || | ||| | | ||||| || || |||||||| Sbjct 18425 TC-TGACACCAGGTCGTCGTTCGGAGAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAAT 18483 Query 64749 TTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGG 64808 || || || || || || | || ||||||||||| |||||||| |||||||||| Sbjct 18484 CTTTTTCTCGGGTTCCTTTGCGGCCATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGG 18543 Query 64809 TCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 || | ||| |||||| ||||| || ||||| ||| | ||| Sbjct 18544 ACTCACCTTTAGTAACGAGTTGATCAGCCGCGACGAAGGGATGCAC 18589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301196615920