Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq250 185 2e-41 seq2 102 2e-16 seq18 84.2 5e-11 >seq250 Length=49273 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| || || || || || || || ||||| || | |||| | Sbjct 6053 ACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCT 5994 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || ||||||||||| |||||||| || || || ||||| ||||||| ||| Sbjct 5993 TCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCC 5934 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| |||||||| || || ||||| || || ||||| | Sbjct 5933 TTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAA 5874 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || || | ||||| ||||| | |||||| Sbjct 5873 AGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||||||||||| |||| | | ||||| Sbjct 2402 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTATAATCCGAAAGGCTGCGACCATCC 2343 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 2342 TCAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 2299 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||||| || || || ||||||||| || |||||| Sbjct 4799 CCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCAATCGTGTCAGAGGACTCCACCTCG 4740 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| ||||| ||||| ||||| | |||||| || Sbjct 4739 AGGGTGATAGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCATGTT 4693 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || |||||||||||||| || |||||||| ||||| | || | Sbjct 5541 ACGAAGACGGAGCACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGACAGACT 5482 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | |||||||| ||||||||||| || || || | ||||||||||||||| || Sbjct 5481 GCGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAAGCGTTGTTGGTCAGGGGG 5428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| |||||||| || |||||||| || | ||| | ||||| Sbjct 2117 AGGACAAGGTGCAGAGTCGACTCTTTCTGAATGTTATAGTCGGAAAGCTGGCGACCATCC 2058 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 2057 TCGAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCGGGAGG 2014 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| ||||||||||| || || ||||| || | ||| | |||||| Sbjct 2689 AGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGAAAGTTGGCGTCCATCC 2630 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || || ||||| || |||||||| ||||||||||||||||| || Sbjct 2629 TCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGTGG 2586 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||| ||||| || || |||||||| || | ||| Sbjct 2988 ACGAAGGCGGAGGACAAGGTGTAGAGTCGACTCCTTCTGAATGTTATAGTCGGAAAGTTG 2929 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | ||||| || || ||||| || |||||||| ||||| |||||||| || || Sbjct 2928 GCGACCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCGGGTGG 2875 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||||||| ||||| || || || || ||||| Sbjct 5651 CCCTCCTTATCCTGGATCTTCGATTTCACGTTGTCGATCGTATCCGAAGACTCGACCTCC 5592 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || ||||||||||| || || | |||||| Sbjct 5591 AGCGTGATCGTCTTACCAGTGAGAGTCTTGACGAAGATCTGCAT 5548 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||| ||||||| || || || |||||||| || || ||||||||| Sbjct 2237 CCTTCCTTGTCCTTAATCTTTTCCTTGACATTGTCGATGGTATCTGATGATTCAACCTCC 2178 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || ||||| ||||| || || | ||||||| Sbjct 2177 AGTGTAATAGTCTTGCCGGTGAGCGTCTTCACGAAAATCTGCATT 2133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || || || || || || ||||||| || ||||| Sbjct 2522 CCTTCCTTGTCCTGAATCTTCTGCTTGACATTATCAATAGTGTCAGTCGACTCCACCTCA 2463 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||| ||||| || || | |||||| Sbjct 2462 AGAGTGATAGTCTTGCCGGTGAGCGTCTTCACGAAAATCTGCAT 2419 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 5084 CCTTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCGGACGATTCAACCTCA 5025 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| || || || || | |||||| Sbjct 5024 AGTGTGATAGTCTTGCCAGTGAGCGTTTTCACGAAGATCTGCAT 4981 >seq2 Length=791969 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||| || || || || ||||||||||| ||| ||| |||||| Sbjct 342812 CCTTCCTTGTCCTGGATTTTCGACTTAACATTGTCGATGGTGTCGGAGGATTCGACCTCG 342871 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| |||||||| ||||| || || | |||||| Sbjct 342872 AGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 342915 >seq18 Length=246705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| ||||||||||| || |||| || | | ||||| Sbjct 93568 AGGACGAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAGAGAGAACGACCATCC 93627 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || |||||||| |||||||| ||||| || ||||| || |||| |||| Sbjct 93628 TCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAA-TCCT 93677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159132826539215