Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq250 91.5 1e-13 >seq250 Length=49273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || |||||||| || | ||| ||||| | || || ||||| ||||| || || Sbjct 6022 TCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAG 5963 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||||| || | | || |||||| ||| || || | ||| Sbjct 5962 ATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTT-TGACTTCACGTT 5904 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| || |||||| || |||| ||||| | || || |||| ||| || || Sbjct 5903 GTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGAC 5844 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 5843 AAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429538841502683