Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq250 156 1e-32 >seq250 Length=49273 Score = 156 bits (172), Expect = 1e-32 Identities = 161/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG- 225550 |||||| | |||||||||||||| || ||||| || || | ||| || || | |||| Sbjct 6053 ACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAG--AAAGG 5996 Query 225551 -TTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||| ||||| || |||||||| ||||||||||| || || || |||||||| ||||| Sbjct 5995 CTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATT 5936 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||||||||| ||||||||| |||||| || || ||||| || | || || || Sbjct 5935 CCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCC 5876 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||||||||| || ||||| || || Sbjct 5875 AAAGTGATCGTCTTCCCTGTCAACGTCTT 5847 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||||||||| || |||| |||||| |||| | | | | ||||| Sbjct 5250 AGGACGAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGACTGCGGCCATCC 5191 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| || |||||||| || || || |||||||| || || Sbjct 5190 TCAAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGGAT 5144 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || |||| ||||| |||| ||| | | ||||| Sbjct 4964 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGCTGCGACCATCC 4905 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || ||||| || ||||||||||| || || || |||||||| || || Sbjct 4904 TCAAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGAT 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511474415954