Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq277 111 1e-19 seq3 95.1 1e-14 >seq277 Length=43962 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930 ||| ||||| ||||||||||||| |||||| | |||||||| ||| | | ||||| || Sbjct 18227 AATTTGAAACCCGTAAAAGCATCGAGCTTCAGCAACTTGAACCTCGCTGCTGAATCTCTC 18168 Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 || ||||| ||||| ||||| || || || ||||| ||||| | || || || Sbjct 18167 GACCAAGTTCTCGTTGACTATGCCATCCGATGCGGCAAAGAACGCGAGGACGTGGCTGAT 18108 Query 4991 AAAGTACTGTTCGTCA-GGCTTAAGTTTT--TTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 |||| |||||||| ||| || || | ||| | || |||||| | | ||| Sbjct 18107 GAAGTGACGTTCGTCATCGCTCAACTTGTCACGCCAATCACCCATATCTTTGGAAAGATC 18048 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 |||||||| | ||||| || |||||||| || || |||||||| Sbjct 18047 CACTTCTTCCGCTGTCCAGAAAGACGCTTCGGCCTTCTTGTACAT 18003 >seq3 Length=549351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCT 4622 |||| || ||||| | ||| || || ||||| || || | || ||||| | ||| Sbjct 261390 TGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCT 261449 Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 | ||| || ||||| || || || || || || ||||| ||||| |||||||| |||||| Sbjct 261450 CGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCG 261509 Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742 |||||||| | | || |||| || | ||||| ||||| | | ||| Sbjct 261510 GCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAGATCCAGTGGAGAGCC 261569 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 |||| || || ||||||||||| |||||||| Sbjct 261570 CAGTCGGCCTTCTTCTTAACGCAAGGAATTGT 261601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930 ||| || ||||| || ||||| | ||| || | ||||||||||||| | |||| || Sbjct 261748 AATTTGGAATCCATAGAAGCACCGAGCCTCCGCAGCTTGAACTTCGTTGCTGAATCGCTC 261807 Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 || | ||| |||||||| |||||||| || || || ||||| | |||||| | Sbjct 261808 AACAAGGTTCTCGTTTACGATACCGTCGGACGCAGCGAAGAACGCAAGAACATGGCTGAC 261867 Query 4991 AAAGTACTGTTCG-TCAGGCTTAAGT--TTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 |||| | ||| | | |||| | || | ||||| | | | || || | | ||| Sbjct 261868 GAAGTGGCGCTCGTTGTCGTTTAACTTGTTCTGCCAGTCGTGGAGGTCCTTGGAAAGATC 261927 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 | || || ||||||| ||||| ||||| || || |||||||| |||||| Sbjct 261928 CATCTCCTCGGCAGTCCAGAACGAAGCTTCAGCCTTCTTGTACATTTGCCAAAT 261981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427042880774903