Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1111 102 1e-16 seq277 91.5 2e-13 >seq1111 Length=1418 Score = 102 bits (112), Expect = 1e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| || ||||| ||||| | ||||||| |||||| ||||| |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 | | ||||||||| ||||| || || ||| | ||||| || | || || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGATG 875 Query 48582 AAATATTTTTCGTTGGAAGTC-AGTTTATTC---CAGTCATTGATATCTTTTGATATATC 48637 |||| ||| ||| || ||||||| | || || ||||| || || | ||| Sbjct 876 AAATGACGTTC-TTGATCGTTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAGATC 934 Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| |||||||| || |||||||||||| || ||||| |||||||| Sbjct 935 CATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq277 Length=43962 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 ||||| || | || || || |||||| ||| ||||| || ||||| | ||| || || Sbjct 18582 CCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAGTCCTGGCATCAATCCCCGCTTC 18523 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || ||||| || || ||||| || || || || || || || ||||| || || || || Sbjct 18522 TTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAAGATTCCTTCAACCGCAGCGAAA 18463 Query 48282 GCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATCCACCGTTGTGCCCAAT 48336 || | | |||||| ||| | | | | |||| ||||| || | ||||| | Sbjct 18462 GCCACCAAACGTTCTCCG-AAC-GACGACCTGGTGTCAGATATCCAACGAAGCGCCCACT 18405 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||||||||| |||||||| || || ||||| || Sbjct 18404 CGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657589782240