Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq57 114 2e-20 seq1111 109 8e-19 seq277 95.1 2e-14 >seq57 Length=175691 Score = 114 bits (126), Expect = 2e-20 Identities = 243/358 (68%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 ||||| || ||||||||| | || || || | |||||| |||| | |||||| ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 76934 CCCTCTATACTATCATCCATCATGT-TAAGAAGAAA-AC-AGCTAGACATTTGATGATGA 76990 ||||| || || || ||| ||||| || || ||| || |||| ||| || | | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCT---CATCTGGGGGTTG 68933 Query 76991 ACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGA 77050 |||||| ||||| |||| |||||| ||| || ||||| | || || | ||| Sbjct 68932 GGAGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGA 68873 Query 77051 TTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATC 77110 || || || |||||| || ||| || || | |||||| || | |||||||||||| Sbjct 68872 TTATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATA 68813 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 | ||| ||||| |||| || | | || || || ||||| | ||| || || Sbjct 68812 AGCATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCG 68753 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAAT 77228 | ||| || ||||| || || | ||| ||||| | ||||| || || | |||| Sbjct 68752 AGAGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGATCGCGGAAT 68695 >seq1111 Length=1418 Score = 109 bits (120), Expect = 8e-19 Identities = 169/237 (71%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| || ||||| ||||| | |||||| | ||||| ||||| |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTC- 814 Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||||| ||||||||||||||| || || ||| | ||||| || | || || || || Sbjct 815 GACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGAT 874 Query 47070 AAAAT---ATTTTTCATCGGTAGTCAGTTTA---TTCCAGTCATTGATATCTTTTGATAT 47123 |||| || || |||| | |||||| | ||| || ||||| || || | Sbjct 875 GAAATGACGTTCTTGATCG---TTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAG 931 Query 47124 ATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||| | ||||| ||||||||||| ||||||||||| || ||||| |||||||| Sbjct 932 ATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq277 Length=43962 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || ||||| |||||||| |||| ||||||| || || ||||| | | |||| || Sbjct 18226 ATTTGAAACCCGTAAAAGCATCGAGCTTCAGCAACTTGAACCTCGCTGCTGAATCTCTCG 18167 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 ||| ||||| || ||||| ||||| || ||||| || || | || || | || Sbjct 18166 ACCAAGTTCTCGTTGACTATGCCATCCGATGCGGCAAAGAACGCGAGGACGTGGCTGATG 18107 Query 47071 AAATA---TTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCT 47127 || | || |||||| | | | | ||| ||| |||||||| || | ||| Sbjct 18106 AAGTGACGTTCGTCATCGCTCAACTTGTCACGCCAATCACCCATATCTTTGGAAAGATCC 18047 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||||| ||||||||||| ||||| || || || || ||||| | |||||| Sbjct 18046 ACTTCTTCCGCTGTCCAGAAAGACGCTTCGGCCTTCTTGTACATCTCCCATAT 17994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712922895021120