Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq250 159 7e-34 seq2 89.7 1e-12 seq18 87.8 4e-12 >seq250 Length=49273 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| ||| || || || || ||||||| Sbjct 6059 ACCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGA 6000 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| | || |||||||| || || || || || ||||| | ||| || ||||| || Sbjct 5999 AAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 5940 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||||| || ||| | || || |||||||| | ||||| Sbjct 5939 AATTCCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGAC 5880 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||| || ||||| ||||| || || |||||||| Sbjct 5879 CTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||| || |||||||| | ||| ||| | ||||| || ||||||| ||||| || Sbjct 5651 CCCTCCTTATCCTGGATCTTCGATTTCACGTTGTCGATCGTATCCGAAGACTCGACCTCC 5592 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| || | |||||| ||||| |||||||| Sbjct 5591 AGCGTGATCGTCTTACCAGTGAGAGTCTTGACGAAGATCTGCAT 5548 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| || ||||| | ||| ||||| || || || ||||| | | Sbjct 2704 CCACCACGCAGACGAAGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGAA 2645 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || ||| |||||||| ||||| || ||||| ||||| | |||||||||||| Sbjct 2644 AGTTGGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCA 2591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || ||||| | ||| ||| || ||||| |||||||| | Sbjct 5265 CCACCACGCAGACGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 5206 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || ||||||||||||| || || || ||||| ||||||| || || ||||| Sbjct 5205 AGACTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTC 5153 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||| || ||||||||||| || || |||| |||||||| | ||||| ||| Sbjct 2809 CCTTCCTTATCCTGGATCTTTGCCTTGACTTTATCAATAGTGTCATCGGACTCGACCTCG 2750 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| ||||| || || | ||||| ||||||||||||||| Sbjct 2749 AGCGTGATTGTCTTGCCGGTGAGCGTCTTCACGAATATCTGCATT 2705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| || || ||||||||||| || | Sbjct 5547 ACCACCACGAAGACGGAGCACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGA 5488 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||| ||||| || || || || |||||||| ||||| |||||||||||| Sbjct 5487 CAGACTGCGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAAGCGTTGTTGGTCA 5433 >seq2 Length=791969 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || |||||||| ||||| || | || || | ||||| ||||| || | |||||| ||| Sbjct 342812 CCTTCCTTGTCCTGGATTTTCGACTTAACATTGTCGATGGTGTCGGAGGATTCGACCTCG 342871 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 342872 AGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 342915 >seq18 Length=246705 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| || ||||| | || || ||||||||||||||||| | Sbjct 93553 CCACCACGCAGGCGAAGGACGAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAG 93612 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || | || |||||||| ||||| || || || ||||||| || || ||||| Sbjct 93613 AGAGAACGACCATCCTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 93665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046721885952314