Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 seq250 82.4 5e-11 >seq2 Length=791969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/111 (78%), Gaps = 5/111 (5%) Strand=Plus/Plus Query 44230 CACACC-TTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 |||||| |||||| ||| || ||| ||| || ||| | |||||||||| |||||| Sbjct 342807 CACACCCTTCCTTGTCCTGGATTTTCGACTTAACATTGT--CGATGGTGTCGGAGGATTC 342864 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| |||||||||||||| |||||||| ||||| Sbjct 342865 GACCTCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 342915 >seq250 Length=49273 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || | ||| ||| |||| ||| Sbjct 5812 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGACTGCGACCGTCCTCC 5753 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | ||||| ||||| |||||||| ||||||||||| Sbjct 5752 AATTGCTTGCCGGCGAAGATCAAGCGCTGCTGATC 5718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984735888547