Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq250 89.7 1e-12 >seq250 Length=49273 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||||||| ||||||||||| || ||||| || ||||| |||||||| ||||| | Sbjct 2011 ATCCCTCCCGACCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCCAG 2070 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||| |||||| | || ||||| || || ||||| ||||| Sbjct 2071 CTTTCCGACTATAACATTCAGAAAGAGTCGACTCTGCACCTTGT 2114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||||||| |||||||| || ||||||||||| || |||||||| || ||||| | | Sbjct 2296 ATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCAGC 2355 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | ||||||||| |||| || || || || || || ||||| Sbjct 2356 CTTTCGGATTATAACATCCAGAAGGAGTCGACGCTCCACCTTGT 2399 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || ||||||||||||||||| ||| ||| Sbjct 1857 CAGATCTTCGTCAAGACGCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCCTCCGAC 1916 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || | || || || ||||||||||||| || ||||| Sbjct 1917 ACTATAAACAATGTGAAGGAAAAGATTCAGGATAAGGAAGG 1957 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || || || || ||||| ||| ||||| Sbjct 2137 CAGATTTTCGTGAAGACGCTCACCGGCAAGACTATTACACTGGAGGTTGAATCATCAGAT 2196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| |||||||| ||||||| ||||| Sbjct 2197 ACCATCGACAATGTCAAGGAAAAGATTAAGGACAAGGAAGG 2237 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || || || ||||| || ||||| ||| || ||| Sbjct 4984 CAGATCTTCGTGAAAACGCTCACTGGCAAGACTATCACACTTGAGGTTGAATCGTCCGAC 5043 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| |||||||| |||||||||||||| ||||| Sbjct 5044 ACTATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAAGG 5084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||| || |||||||| | ||| Sbjct 2422 CAGATTTTCGTGAAGACGCTCACCGGCAAGACTATCACTCTTGAGGTGGAGTCGACTGAC 2481 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || || || ||||| || |||||||||||||| ||||| Sbjct 2482 ACTATTGATAATGTCAAGCAGAAGATTCAGGACAAGGAAGG 2522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711289157454