Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq250 134 1e-26 seq2 86.0 6e-12 seq717 82.4 7e-11 >seq250 Length=49273 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| ||||||||||| |||||||| || Sbjct 6058 CCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAA 5999 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||| | || | || |||||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 5998 AGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 5939 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| |||| ||| | | | ||||| |||||| || Sbjct 5938 ATTCCTTCCTTGTCCTGGATCTTTGACTTC-ACGTTGTCAATCGTGTCCGACGACTCGAC 5880 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || |||| |||||| || || |||||||| Sbjct 5879 CTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| |||||||| || || |||||||| Sbjct 5266 GCCACCACGCAGACGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 5207 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| |||| | || || |||||||| |||||||| ||||||||||| ||||| Sbjct 5206 GAGACTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTC 5153 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41629 ATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 ||||| | || || || || || | || || || || || ||||||||||||||||| Sbjct 3001 ATCACAGACCACCACGAAGGCGGAGGACAAGGTGTAGAGTCGACTCCTTCTGAATGTTAT 2942 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 ||||||| || ||| | || ||||| ||||| |||||||| || ||||||||||||| Sbjct 2941 AGTCGGAAAGTTGGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGGT 2882 Query 41748 C 41748 | Sbjct 2881 C 2881 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||||||| ||||| || || || Sbjct 5546 CCACCACGAAGACGGAGCACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGAC 5487 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||| | || || |||||||||||||| || |||| ||| |||||||| | ||| Sbjct 5486 AGACTGCGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAAGCGTTGTTGGTCAGGGGG 5428 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||| |||||||| ||||||||||| Sbjct 2704 CCACCACGCAGACGAAGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGAA 2645 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||| | || ||||| ||||| |||||||| || ||||| |||||||| Sbjct 2644 AGTTGGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTC 2592 >seq2 Length=791969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || || | ||| |||| ||||| |||||||||||||| Sbjct 342670 CTCCTTCTGGATGTTGTAGTCAGAAAGAGAGCGTCCGTCCTCGAGTTGCTTGCCGGCGAA 342729 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 |||| ||||| ||||| | ||||| ||| Sbjct 342730 AATCAATCGCTGCTGGTCAGGGGGAATGCT 342759 >seq717 Length=5816 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| ||||| ||||| || || |||| | || ||| Sbjct 4604 ACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGACTGCGGCCATCCTCG 4663 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| ||||| || || |||||||||||||| Sbjct 4664 AGCTGCTTTCCGGCAAAGATGAGGCGCTGTTGGTC 4698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296539569200