Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 100 4e-16 seq8 91.5 2e-13 >seq9 Length=1075742 Score = 100 bits (110), Expect = 4e-16 Identities = 240/360 (67%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 205610 CATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattt 205669 || || |||||||||| |||| || | || | ||| || |||||| | |||| Sbjct 471696 CACCTTTAGGATTCCAAGCTGACAAAACGATCCTCCTATCCGTTGGATTATTTCTAATTT 471755 Query 205670 tatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCA 205728 | | |||| || | |||||||| | |||| | |||||| ||| || || Sbjct 471756 TTTCAATAACCTGCGCCAATTGATCCACCCCTTTCCCTCTATAATCATCATCACAAGTCC 471815 Query 205729 ATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||| || || ||||| | ||||||||| |||||||| || || | |||||||| | Sbjct 471816 C-ATATTCTGCTCCGAAATGTCTCCATTGAAATCCATAAACCGGTCCAAGATCACCTTGT 471874 Query 205789 TTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaata 205848 ||||||| || || ||| ||| | | ||| | | |||||| |||||||||| Sbjct 471875 CTTCTATCTTTCAATCCAACTTTATCCAAATACTCTCTACTTCCATTCCCATCCCAAATC 471934 Query 205849 tggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAAT 205908 |||||| || || | ||| || ||||| || |||||||| | |||| Sbjct 471935 CCAATTCCTAAATCCGATAATAAATTCCCATCTGTTGAACCCCGAATAAACCAAAGTAAT 471994 Query 205909 TCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA---TGAATCA 205965 |||||||||| || | |||| | | ||| || || | |||||| || ||||||| Sbjct 471995 TCTTCAACAACACCACGTAAAAAAACTCTTTTAGTAGTGAGTAATGGGAAAGTTGAATCA 472054 >seq8 Length=1050647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | ||| || |||||||||||||||||||| |||||||||||| Sbjct 743245 GATACGATCGATAATGTCAAATCAAAGATTCAAGATAAAGAAGGTATTCCACCTGATCAA 743304 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || ||| | |||||||| || || || || |||||| | | ||||| ||||||| Sbjct 743305 CAGAGGTTGATTTTTGCTGGGAAGCAGTTGGAGGATGGGAGGACATTGAGTGATTATA 743362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | ||| || |||||||||||||||||||| |||||||||||| Sbjct 743676 GATACTATCGATAATGTCAAATCCAAGATTCAAGATAAAGAAGGTATCCCACCTGATCAA 743735 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||| | |||||||| || || |||||||| || || || | || || ||||||| Sbjct 743736 CAACGTCTTATTTTCGCTGGTAAACAATTGGAAGACGGTAGGACTTTGAGTGATTATA 743793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455253987200