Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 196 4e-45 seq8 96.9 3e-15 seq5 86.0 6e-12 seq11 82.4 7e-11 >seq1 Length=2435598 Score = 196 bits (216), Expect = 4e-45 Identities = 298/421 (71%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 |||||||| | | |||| | || | ||| || || | ||| ||||||||||| ||| Sbjct 131132 GGACACATCAAAGCCCACTCTCCATCCTCTTCTACACGACGCATGAAAAGATCCGGGATC 131073 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC--A 23429 || | |||||||| | || || || || || || ||||| ||| || | |||||| | Sbjct 131072 CACAACGCGTAGAATAAATCACGAGCTCGAACTTCTTCTTTACCG-TGAT-TTTTTCGTA 131015 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 ||| | |||||| || ||||| || ||||| ||||||||||||| |||||| || || | Sbjct 131014 GATCGATAAAGTCGAAAACGTCGGCGTGCCATGGCTCGAGGTAAATGGCAAAAGCACCTG 130955 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 ||| ||| || || || ||||||||||| || || || || ||| ||| ||||| | Sbjct 130954 GTCGCTTGTTACCACCTTGATCGACGTATCGAGCGGTTGCGTCGTAAGCTCGAAGCATAG 130895 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| |||||| || ||| | || || | ||||| || || |||| || Sbjct 130894 GAACGATACCGTTCGAGTACCCGTTTGTACCAGCGATGTAAGAACCCTTGGCACGAATGT 130835 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||||| || || ||| || || || | | || || ||||| || || ||| |||| Sbjct 130834 TGTGAATGTTGAGACCGATACCACCTGCTGTCTTGGAGATCATGGCACAAGTTTTGAGAG 130775 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 | || ||||| || |||||| ||||| || |||||| | |||||| || || | || Sbjct 130774 TATCATAGATACCTTCGATGGAATCCTCCTTCATCGCGATGAGGAAACATGACGAAAGTT 130715 Query 23730 G 23730 | Sbjct 130714 G 130714 Score = 114 bits (126), Expect = 1e-20 Identities = 277/419 (66%), Gaps = 3/419 (1%) Strand=Plus/Minus Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || ||||| ||||| || | | || || || || |||||| ||| | || ||| Sbjct 132078 ACGACTTGGAACTCTCCAGCGAGCACACGACGAGTATAGATGTTGCTGGTGTAAGGCTCG 132019 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | ||||| |||||| ||||||| ||||| ||||| ||||||||||| | ||| Sbjct 132018 AAGCACTCATTCCATCCCAGGATCTGAGACGTCGACGCGGTAGGCATCGGCGCGACCAGG 131959 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 || |||||||||| ||||| || | || || |||||| ||||||||||||| || Sbjct 131958 AGGGAGTTTCTCAGACCGTGTTTGGCGATGTTGGCCTTGAGAGTCGACCAGTCCCAGAGT 131899 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696 || ||| || | | |||||| ||| |||||| | ||| || || || Sbjct 131898 GAGGTCGGGGT---AATACCCCACAGGTCGAATTGCAGCCTGCCCTCGCTGGCAGGAGAT 131842 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 ||| ||| || ||| |||| | ||| | ||||| ||||| | || | || Sbjct 131841 CCTGGGTAAGTCAGGTAGTGACCCTCAATCTCAGCAAGCTCGCAAGAAGATTCAAGAGCT 131782 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 ||| || || ||||| ||||| || ||| | ||| ||| || ||| | Sbjct 131781 GCGTGGTAAATGGTCTCAAAGATCTTGAGGTTGAGTTCCCGGGCCTGAGGGCCATCGAAT 131722 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 |||||||| | || ||| || || || | ||| |||||||| | ||| | ||||| Sbjct 131721 GGCATACGGAGAGCCATGAATGCATCGGCGAGACCTTGAACGCCGAGACCAACGGGTCG 131663 >seq8 Length=1050647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| ||||||| ||||| ||||| |||| || || | ||| Sbjct 744355 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAAACCATCACTCTCGAAGTCGAGTCTTCC 744414 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||||||||||| | || || || ||| Sbjct 744415 GATACGATCGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGTATCCCTCCTGATCAG 744474 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| | ||| | ||| || ||| Sbjct 744475 CAGAGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACTCTCTCCGACTACAAC 744534 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || |||||| |||| || |||| Sbjct 744535 ATCCAAAAGGAGTCTACACTTCATTTGGTTCTCCGACT 744572 >seq5 Length=1209326 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 ||| ||||| || || |||||| |||| ||||| | ||||||| |||| | ||||| Sbjct 1116929 TCTTACAGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAA 1116870 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | || ||||||||| || | || || || || ||| | | || |||||||| Sbjct 1116869 GTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAGAGGTTGATCTTCGCTGG 1116810 Query 31333 CAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392 ||| ||| | || || || |||| | ||||| ||||| || || || || ||||| Sbjct 1116809 CAAGCAGCTCGAGGATGGTAGGACTCTATCGGATTACAACATCCAGAAGGAGTCTACTCT 1116750 Query 31393 TCATCTGGTACT 31404 |||| |||| || Sbjct 1116749 TCATTTGGTCCT 1116738 >seq11 Length=975176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || |||||| |||||||||| || || ||||| || |||| ||| |||||||||||| Sbjct 836884 ATCTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGATTGACCTTTTCAAACGAGTTGATA 836825 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || || || ||||| || || ||||| || ||||| Sbjct 836824 TCCCGTGATGAAGGTCTTCACACCGATTTCGCATGCCT 836787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765959805680