Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03-
01] 79 sequences; 24,117,869 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 196 4e-45
seq8 96.9 3e-15
seq5 86.0 6e-12
seq11 82.4 7e-11
>seq1
Length=2435598
Score = 196 bits (216), Expect = 4e-45
Identities = 298/421 (71%), Gaps = 4/421 (1%)
Strand=Plus/Minus
Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371
|||||||| | | |||| | || | ||| || || | ||| ||||||||||| |||
Sbjct 131132 GGACACATCAAAGCCCACTCTCCATCCTCTTCTACACGACGCATGAAAAGATCCGGGATC 131073
Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC--A 23429
|| | |||||||| | || || || || || || ||||| ||| || | |||||| |
Sbjct 131072 CACAACGCGTAGAATAAATCACGAGCTCGAACTTCTTCTTTACCG-TGAT-TTTTTCGTA 131015
Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489
||| | |||||| || ||||| || ||||| ||||||||||||| |||||| || || |
Sbjct 131014 GATCGATAAAGTCGAAAACGTCGGCGTGCCATGGCTCGAGGTAAATGGCAAAAGCACCTG 130955
Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549
||| ||| || || || ||||||||||| || || || || ||| ||| ||||| |
Sbjct 130954 GTCGCTTGTTACCACCTTGATCGACGTATCGAGCGGTTGCGTCGTAAGCTCGAAGCATAG 130895
Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609
| |||| |||||| || ||| | || || | ||||| || || |||| ||
Sbjct 130894 GAACGATACCGTTCGAGTACCCGTTTGTACCAGCGATGTAAGAACCCTTGGCACGAATGT 130835
Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669
|||||| || || ||| || || || | | || || ||||| || || ||| ||||
Sbjct 130834 TGTGAATGTTGAGACCGATACCACCTGCTGTCTTGGAGATCATGGCACAAGTTTTGAGAG 130775
Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729
| || ||||| || |||||| ||||| || |||||| | |||||| || || | ||
Sbjct 130774 TATCATAGATACCTTCGATGGAATCCTCCTTCATCGCGATGAGGAAACATGACGAAAGTT 130715
Query 23730 G 23730
|
Sbjct 130714 G 130714
Score = 114 bits (126), Expect = 1e-20
Identities = 277/419 (66%), Gaps = 3/419 (1%)
Strand=Plus/Minus
Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516
|| ||||| ||||| || | | || || || || |||||| ||| | || |||
Sbjct 132078 ACGACTTGGAACTCTCCAGCGAGCACACGACGAGTATAGATGTTGCTGGTGTAAGGCTCG 132019
Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
|| | ||||| |||||| ||||||| ||||| ||||| ||||||||||| | |||
Sbjct 132018 AAGCACTCATTCCATCCCAGGATCTGAGACGTCGACGCGGTAGGCATCGGCGCGACCAGG 131959
Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636
|| |||||||||| ||||| || | || || |||||| ||||||||||||| ||
Sbjct 131958 AGGGAGTTTCTCAGACCGTGTTTGGCGATGTTGGCCTTGAGAGTCGACCAGTCCCAGAGT 131899
Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696
|| ||| || | | |||||| ||| |||||| | ||| || || ||
Sbjct 131898 GAGGTCGGGGT---AATACCCCACAGGTCGAATTGCAGCCTGCCCTCGCTGGCAGGAGAT 131842
Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756
||| ||| || ||| |||| | ||| | ||||| ||||| | || | ||
Sbjct 131841 CCTGGGTAAGTCAGGTAGTGACCCTCAATCTCAGCAAGCTCGCAAGAAGATTCAAGAGCT 131782
Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816
||| || || ||||| ||||| || ||| | ||| ||| || ||| |
Sbjct 131781 GCGTGGTAAATGGTCTCAAAGATCTTGAGGTTGAGTTCCCGGGCCTGAGGGCCATCGAAT 131722
Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875
|||||||| | || ||| || || || | ||| |||||||| | ||| | |||||
Sbjct 131721 GGCATACGGAGAGCCATGAATGCATCGGCGAGACCTTGAACGCCGAGACCAACGGGTCG 131663
>seq8
Length=1050647
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| ||||||| ||||| ||||| |||| || || | |||
Sbjct 744355 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAAACCATCACTCTCGAAGTCGAGTCTTCC 744414
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || | || ||||||||||| | || || || |||
Sbjct 744415 GATACGATCGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGTATCCCTCCTGATCAG 744474
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || ||||| || ||||| | |||||| | ||| | ||| || |||
Sbjct 744475 CAGAGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACTCTCTCCGACTACAAC 744534
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| ||||| || || || |||||| |||| || ||||
Sbjct 744535 ATCCAAAAGGAGTCTACACTTCATTTGGTTCTCCGACT 744572
>seq5
Length=1209326
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272
||| ||||| || || |||||| |||| ||||| | ||||||| |||| | |||||
Sbjct 1116929 TCTTACAGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAA 1116870
Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332
| || ||||||||| || | || || || || ||| | | || ||||||||
Sbjct 1116869 GTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAGAGGTTGATCTTCGCTGG 1116810
Query 31333 CAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392
||| ||| | || || || |||| | ||||| ||||| || || || || |||||
Sbjct 1116809 CAAGCAGCTCGAGGATGGTAGGACTCTATCGGATTACAACATCCAGAAGGAGTCTACTCT 1116750
Query 31393 TCATCTGGTACT 31404
|||| |||| ||
Sbjct 1116749 TCATTTGGTCCT 1116738
>seq11
Length=975176
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088
|| |||||| |||||||||| || || ||||| || |||| ||| ||||||||||||
Sbjct 836884 ATCTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGATTGACCTTTTCAAACGAGTTGATA 836825
Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
|| || || || ||||| || || ||||| || |||||
Sbjct 836824 TCCCGTGATGAAGGTCTTCACACCGATTTCGCATGCCT 836787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765959805680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |