Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=2435598 Score = 150 bits (166), Expect = 2e-31 Identities = 371/563 (66%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 ||||| || ||||| || || ||| |||||| ||| |||| | ||| | ||| || | | Sbjct 131303 GCATCTTTGTAAAGCATGAATGGACCACCAGTCTCAGTCTGTGCTTCGAGAATAGCGTAC 131244 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 71937 || | | | || || || || ||| |||| | | || |||||| ||| Sbjct 131243 CATAGTTTTTGCGCTTTGATCATCTTCCTGTACTTGCCCTGCCTCTCGTATGACTCGTAT 131184 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATC 71997 | | ||||| | | ||| | || | ||||||||||||| |||| ||||||||| Sbjct 131183 AGTTCATCGAAAGCCTTTCCATGACAATCGGCTAATCCAGGACACTCATGTGGACACATC 131124 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 || | |||||||||||| || | ||| || ||| || ||||| || ||||| | || Sbjct 131123 AAAGCCCACTCTCCATCCTCTTCTACACGACGCATGAAAAGATCCGGGATCCACAACGCG 131064 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 |||| ||| | | || | || || || || ||| ||| ||||||| || Sbjct 131063 TAGAATAAATCACGAGCTCGAACTTCTTCTTTACCGTGATTTTTTCGTAGATCGATAAAG 131004 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | || || | ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 131003 TCGAAAACGTCGGCGTGCCATGGCTCGAGGTAAATGGCAAAAGCACCTGGTCGCTTGTTA 130944 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | ||||| |||||| | ||| ||| | ||| |||| ||||| Sbjct 130943 CCACCTTGATCGACGTATCGAGCGGTTGCGTCGTAAGCTCGAAGCATAGGAACGATACCG 130884 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || || || || || | ||| || || |||||||||| ||| ||| Sbjct 130883 TTCGAGTACCCGTTTGTACCAGCGATGTAAGAACCCTTGGCACGAATGTTGTGAATGTTG 130824 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 ||||| || || ||||| | || ||||| | || || ||| | ||||||||||| Sbjct 130823 AGACCGATACCACCTGCTGTCTTGGAGATCATGGCACAAGTTTTGAGAGTATCATAGATA 130764 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || || ||| ||| |||| Sbjct 130763 CCTTCGATGGAATCCTCCTTCAT 130741 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816 || |||||||| | |||||| || |||||||| | ||||| | ||| |||| || ||| Sbjct 130038 ACCTCACTAAACACTTTTTTAGTCTCCTTGTGCAAGTTTGAAATGGCGATTCGAGCTGCT 129979 Query 72817 AGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGCCAG 72872 | ||| |||||||||||||||| || || ||||| |||||| |||| ||||| || Sbjct 129978 AAAATTGCATAATCTGGATGTTTGGTCGT-CAAGTATGCTGCTGTTTCGGCTGCGAG 129923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138537250040