Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 140 7e-28 seq5 123 6e-23 >seq8 Length=1050647 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | |||||| || || || || || ||||| Sbjct 744584 ATTCCACCACGAAGTCGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCG 744525 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||||||| |||||||| || || ||||| | |||||| ||||||||| Sbjct 744524 GAGAGAGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGA 744465 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | |||||||| || | |||||| || || Sbjct 744464 GGGATACCTTCCTTGTCTTGAATCTTGGACTTTACATTATCGATCGTATCGGAAGACTCG 744405 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || | || || || || || ||||| Sbjct 744404 ACTTCGAGAGTGATGGTTTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 744355 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 |||| ||| | ||| ||||||||||| | |||||| ||||| ||||| || | |||| Sbjct 743793 TATAATCACTCAAAGTCCTACCGTCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTT 743734 Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 ||||||| || || ||||||||||| |||||||| | ||| ||||| || | |||||| Sbjct 743733 GATCAGGTGGGATACCTTCTTTATCTTGAATCTTGGATTTGACATTATCGATAGTATCGG 743674 Query 104502 TAGGTTCTACCTCT 104515 || ||| |||||| Sbjct 743673 AAGATTCGACCTCT 743660 Score = 107 bits (118), Expect = 4e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || ||||| | || || || ||||| || || ||||||||||| || || | ||| ||| Sbjct 744758 TAATCAGACAATGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGA 744699 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || || || || || |||||||| | ||| || || || | |||||| | Sbjct 744698 TCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGATTTCACGTTATCGATCGTATCGGAA 744639 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | |||||||| | || ||||| || || || | ||||| ||||| || |||||| Sbjct 744638 GACTCTACCTCCAACGTGATAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTGCATT 744582 Score = 96.9 bits (106), Expect = 8e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 || || || || || | || || ||||||||||| | ||||||||||||||| || || Sbjct 743348 GTCCTCCCATCCTCCAACTGCTTCCCAGCAAAAATCAACCTCTGTTGATCAGGTGGAATA 743289 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||||||||| |||||||||| ||| ||||| || | ||||| | ||| || || Sbjct 743288 CCTTCTTTATCTTGAATCTTTGATTTGACATTATCGATCGTATCTGATGATTCGACTTCG 743229 Query 104516 AGTGTAATAGTCT 104528 || || || |||| Sbjct 743228 AGGGTGATTGTCT 743216 >seq5 Length=1209326 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || || |||||||| ||||| || || || || || ||| Sbjct 1116753 GTAGACTCCTTCTGGATGTTGTAATCCGATAGAGTCCTACCATCCTCGAGCTGCTTGCCA 1116812 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||||||||||||| || || || || || ||||| ||||| | || Sbjct 1116813 GCGAAGATCAACCTCTGTTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 1116872 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | ||| ||| || || ||||| || || || |||||||| ||||| Sbjct 1116873 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCTGTAAG 1116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397234568932