Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03-
01] 79 sequences; 24,117,869 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq8 116 3e-21
seq5 86.0 5e-12
>seq8
Length=1050647
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||||| || |||||||| ||||||| ||||| || | ||
Sbjct 744355 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAAACCATCACTCTCGAAGTCGAGTCTTCC 744414
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || || |||||||||||||| ||||| || || |||||
Sbjct 744415 GATACGATCGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGTATCCCTCCTGATCAG 744474
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || || ||||| ||||| | || || || || ||||||| ||||||
Sbjct 744475 CAGAGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACTCTCTCCGACTACAAC 744534
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| ||||| || || || | ||||| ||| | ||| | || || ||
Sbjct 744535 ATCCAAAAGGAGTCTACACTTCATTTGGTTCTCCGACTTCGTGGTGG 744581
Score = 114 bits (126), Expect = 1e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| |||||||| || || ||||| |||| | || || || | ||
Sbjct 744583 ATGCAAATCTTTGTCAAAACTTTGACAGGGAAAACTATCACGTTGGAGGTAGAGTCTTCC 744642
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | ||| || |||||||||||||||||||||||||| |||||
Sbjct 744643 GATACGATCGATAACGTGAAATCCAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 744702
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
|| |||||||| ||||| || || ||| | || ||| | | || | || |||||||
Sbjct 744703 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACATTGTCTGATTACA 744760
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
|||| || ||||| ||| | | ||||| | || | |||| || ||||||||||
Sbjct 744080 TCACCCTCGAAGTTGAATCATCTGATACTATCGATAACGTCAAGTCCAAGATTCAAGACA 744139
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
|||||||||| ||||| |||||||||||||| || || || || ||||| | |||||
Sbjct 744140 AGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCGGGTAAACAACTCGAGGACG 744199
Query 22376 ACCGCACCGTCTCCGATTACA 22396
|| || |||| |||||||
Sbjct 744200 GTCGTACTCTCTCTGATTACA 744220
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365
|| || |||||||||||||| ||||| |||||||||||||| || || |||||||| |||
Sbjct 545142 ATCCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCCGGCAAGCAG 545201
Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||| || || ||||||| ||||
Sbjct 545202 CTCGAAGATGGACGAACTCTCTCCGACTACA 545232
>seq5
Length=1209326
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| ||||| || |||| || || || || | |||| ||| | ||| || ||||
Sbjct 1116925 ACAGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGTCC 1116866
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || |||||||||||||| ||||| |||||||| | | || || || |||||
Sbjct 1116865 AAGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAGAGGTTGATCTTCGCTGGCAAG 1116806
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| | || | || ||||||||||| || || || || || | |||
Sbjct 1116805 CAGCTCGAGGATGGTAGGACTCTATCGGATTACAACATCCAGAAGGAGTCTACTCTTCAT 1116746
Query 22423 TTAGT 22427
|| ||
Sbjct 1116745 TTGGT 1116741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727595880635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |