Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8 116 3e-21 seq5 86.0 5e-12 >seq8 Length=1050647 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || |||||||| ||||||| ||||| || | || Sbjct 744355 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAAACCATCACTCTCGAAGTCGAGTCTTCC 744414 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || |||||||||||||| ||||| || || ||||| Sbjct 744415 GATACGATCGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGTATCCCTCCTGATCAG 744474 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||||| | || || || || ||||||| |||||| Sbjct 744475 CAGAGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACTCTCTCCGACTACAAC 744534 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | ||| | || || || Sbjct 744535 ATCCAAAAGGAGTCTACACTTCATTTGGTTCTCCGACTTCGTGGTGG 744581 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || || ||||| |||| | || || || | || Sbjct 744583 ATGCAAATCTTTGTCAAAACTTTGACAGGGAAAACTATCACGTTGGAGGTAGAGTCTTCC 744642 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| || |||||||||||||||||||||||||| ||||| Sbjct 744643 GATACGATCGATAACGTGAAATCCAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 744702 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || |||||||| ||||| || || ||| | || ||| | | || | || ||||||| Sbjct 744703 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACATTGTCTGATTACA 744760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || ||||| ||| | | ||||| | || | |||| || |||||||||| Sbjct 744080 TCACCCTCGAAGTTGAATCATCTGATACTATCGATAACGTCAAGTCCAAGATTCAAGACA 744139 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||||||||| ||||| |||||||||||||| || || || || ||||| | ||||| Sbjct 744140 AGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCGGGTAAACAACTCGAGGACG 744199 Query 22376 ACCGCACCGTCTCCGATTACA 22396 || || |||| ||||||| Sbjct 744200 GTCGTACTCTCTCTGATTACA 744220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || |||||||||||||| ||||| |||||||||||||| || || |||||||| ||| Sbjct 545142 ATCCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCCGGCAAGCAG 545201 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||| || || ||||||| |||| Sbjct 545202 CTCGAAGATGGACGAACTCTCTCCGACTACA 545232 >seq5 Length=1209326 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| || || || || | |||| ||| | ||| || |||| Sbjct 1116925 ACAGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGTCC 1116866 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| ||||| |||||||| | | || || || ||||| Sbjct 1116865 AAGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAGAGGTTGATCTTCGCTGGCAAG 1116806 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| | || | || ||||||||||| || || || || || | ||| Sbjct 1116805 CAGCTCGAGGATGGTAGGACTCTATCGGATTACAACATCCAGAAGGAGTCTACTCTTCAT 1116746 Query 22423 TTAGT 22427 || || Sbjct 1116745 TTGGT 1116741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727595880635