Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 7e-15 seq16 93.3 9e-14 >seq4 Length=1188950 Score = 96.9 bits (106), Expect = 7e-15 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| ||| | |||| | |||| || |||||| || || Sbjct 816877 GGTCCCAACGGTTCCGGAAAGTCCACCTTGGTCAAGCTTTTGACCGGTGAGACCGAGCCC 816818 Query 280239 A--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | ||| | | |||||||| |||||| || || | |||||| ||||||||| Sbjct 816817 AACCTCGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTTATCGGTTACGTTGCTCAGCAC 816758 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||| || |||| || || | | ||||| |||||| Sbjct 816757 GCTTTCCACCACATCGATCACCATCTCGACAAAACCCCGCTCGACTACATGTTGTGGCGA 816698 Query 280356 TA 280357 || Sbjct 816697 TA 816696 Score = 91.5 bits (100), Expect = 3e-13 Identities = 359/555 (65%), Gaps = 20/555 (4%) Strand=Plus/Minus Query 279339 GAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTG 279398 ||| | || ||||| ||||| ||||| ||||| ||||| || |||| ||||| || Sbjct 817714 GAGGCTGGAGAGGACTTGTGTAACTGTACCTTCTCCCTCGCGTACGGTGCCAAGATCTTG 817655 Query 279399 CTAAACT---CTACCCGCC-TCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCC 279454 || ||| |||||| || || |||||||||| |||| || |||||| |||| Sbjct 817654 CTCAACATGGCTACCCTCCGTC----TCAAGCGTGGTCACCGATACGGTCTCTGTGGTCG 817599 Query 279455 CAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT 279514 || || | ||||| ||| || ||| |||||| | |||||||| | ||||| || Sbjct 817598 TAACGGTTCCGGTAAATCCACCCTCATGAACGCCATCGTCAACGGTCAAGTCGAAGGTTT 817539 Query 279515 TCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTC 279574 || || |||||| || | || | || || | |||||||| ||| || | Sbjct 817538 CCCAGACCCATCTGTCGTCCGAACTTTCTACGTTCAACACGACATTGACGGTTCCGAGGC 817479 Query 279575 GGATAGCACTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC 279634 |||| | | || |||||| || || | | || || | | || | | || Sbjct 817478 CGATATCTCCGTTGTCGACTGGGTAC--TC-GCCGATAAGCGTCTCC---TCGCCACCCC 817425 Query 279635 TGAGGAAATCA--TCCAGAAACTGGAGGCCAATGGTTTTGATGAA-AGAATGCGTAATCT 279691 || || ||| |||| || | | ||||| || | |||| || || | Sbjct 817424 GGATGACATCCGTTCCACT--CTCACCGACGTCGGTTTCGACGCCGAGAA-GCAAAAGCA 817368 Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 | | ||||| || || |||||||||||||||||||| || ||| |||| ||||| | Sbjct 817367 CTCGATCGGTTCCCTCTCCGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGAGCCATCTT 817308 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | || ||| | || || || || ||||| ||||| || |||| |||||| Sbjct 817307 GTTCAAGGCTGATATTCTTCTCCTCGACGAGCCTACCAATCATTTGGATGTTGTCAACGT 817248 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||||| | |||||| || || | || | | ||| |||| ||||| || Sbjct 817247 CACCTGGCTCATCGACTACCTCACTTCCCTCACCAACTGTACCTCCATCATCGTCTCCCA 817188 Query 279872 CGACTCTGGCTTCCT 279886 |||||||| |||||| Sbjct 817187 CGACTCTGACTTCCT 817173 >seq16 Length=848844 Score = 93.3 bits (102), Expect = 9e-14 Identities = 233/347 (67%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 218466 CTTCCAGCCCGGAAACCAGTTGGACCAGTCGAAGACCAACA--TCCCCGTCCCTGACTTC 218523 ||| |||||||||| | | | ||||| ||| | ||| |||| || |||||| Sbjct 569898 CTTTCAGCCCGGAACCTACCTTGACCA--CGATATCAGACAGGTCCCTCTCAAGGACTTC 569955 Query 218524 ATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGC-GT 218582 ||| |||||||||| || || |||||| | || || || || |||| | || Sbjct 569956 ATCAACAAGGAGCTAATCCTCTTCTCGATGGCCGACAATATCCGATCCAT-CCCATCAGT 570014 Query 218583 GGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCT 218642 | || ||| | || || ||||| ||| |||| || | |||||| |||| || Sbjct 570015 CGCTGACGGCTTGAAACCTGGCCAGCGCAAGGTCCTATTCGGTTGCTTCAAGAGGAAACT 570074 Query 218643 GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCA 218702 || |||| || || || || || || | ||||| || || || | || ||||| Sbjct 570075 TGTAAAAGAGATCAAAGTTGCGCAACTTGCCGGTTACGTTTCTGAGAAGACTTCTTACCA 570134 Query 218703 TCACGGTGAGCAGAGTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 |||||| || |||||| || | || | || || || | || || || ||||| | Sbjct 570135 TCACGGCGAACAGAGTTTG-ACCATGACTATCGTCGGTCTCGCTCAAACCTTCGTGGGAA 570193 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 | |||||||| |||||||| |||||||||||| || ||| ||||| Sbjct 570194 GCAACAACATTAACTTGCTCGACCCCAACGGTCAATTCGGTACTCGT 570240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835759636439