Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq34 152 9e-32 seq31 152 9e-32 seq8 152 9e-32 seq5 138 2e-27 seq9 129 1e-24 seq4 120 6e-22 >seq34 Length=15758 Score = 152 bits (168), Expect = 9e-32 Identities = 217/303 (72%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 |||||||||||||||||||| || | ||| | |||||| ||||| ||||||| ||| || Sbjct 14875 CCGTTGCACGCGAACATGCCGTACGACTCCCTGTAGTTGACGACGATCCAGTACGCATAC 14934 Query 268487 ATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATT 268546 | ||| || || | || ||| | |||| || || ||||| | || || | Sbjct 14935 AGCTTGGCGACACCATATGGACTCCTCGGATAAAACGGTGTCGTCTCACTCTGGGGCGTC 14994 Query 268547 TCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT-TTTTC 268605 || ||| | || ||||||| || || || || ||||||||| | | || ||||| Sbjct 14995 TCGACGACCTGACCGTAGAGCTCCGACGTGGAAGCCTGGTAGAACCT-GACGTGCTTTTC 15053 Query 268606 GAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGC 268665 ||||||||| |||||||||| || || | || || ||||||| || || ||||| | Sbjct 15054 GAGACCGCACGTTCGGATTGCGTCCAGAATGCGGAGCGTTCCCAATCCGTCAACGTCGCC 15113 Query 268666 TGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAAC 268725 || ||||| | |||||| || || |||| |||||| |||||| ||||||| || | Sbjct 15114 CGTGTACTCGGCCATCTCAAACGAGACCTTGACATGCGACTGGGCAGCCAGGTTGTAGAT 15173 Query 268726 CTC 268728 ||| Sbjct 15174 CTC 15176 >seq31 Length=21528 Score = 152 bits (168), Expect = 9e-32 Identities = 217/303 (72%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 |||||||||||||||||||| || | ||| | |||||| ||||| ||||||| ||| || Sbjct 3879 CCGTTGCACGCGAACATGCCGTACGACTCCCTGTAGTTGACGACGATCCAGTACGCATAC 3820 Query 268487 ATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATT 268546 | ||| || || | || ||| | |||| || || ||||| | || || | Sbjct 3819 AGCTTGGCGACACCATATGGACTCCTCGGATAAAACGGTGTCGTCTCACTCTGGGGCGTC 3760 Query 268547 TCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT-TTTTC 268605 || ||| | || ||||||| || || || || ||||||||| | | || ||||| Sbjct 3759 TCGACGACCTGACCGTAGAGCTCCGACGTGGAAGCCTGGTAGAACCT-GACGTGCTTTTC 3701 Query 268606 GAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGC 268665 ||||||||| |||||||||| || || | || || ||||||| || || ||||| | Sbjct 3700 GAGACCGCACGTTCGGATTGCGTCCAGAATGCGGAGCGTTCCCAATCCGTCAACGTCGCC 3641 Query 268666 TGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAAC 268725 || ||||| | |||||| || || |||| |||||| |||||| ||||||| || | Sbjct 3640 CGTGTACTCGGCCATCTCAAACGAGACCTTGACATGCGACTGGGCAGCCAGGTTGTAGAT 3581 Query 268726 CTC 268728 ||| Sbjct 3580 CTC 3578 >seq8 Length=1050647 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | ||||| || || || ||||| ||||||||||| || |||| Sbjct 744583 TTCCACCACGAAGTCGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCGG 744524 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || ||||| | || || |||||||| || | || || || || || | Sbjct 744523 AGAGAGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGAG 744464 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||||||||| | ||| || ||||| || || | || || | Sbjct 744463 GGATACCTTCCTTGTCTTGAATCTTGGACTTTACATTATCGATCGTATCGGAAGACTCGA 744404 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||||||||| || || | ||||||||||| || ||||| Sbjct 744403 CTTCGAGAGTGATGGTTTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 744355 Score = 122 bits (134), Expect = 2e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | |||||| |||||||| | |||||| || || || || || | || || Sbjct 744758 TAATCAGACAATGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGA 744699 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| || ||||||||||||||||| | || ||| ||||| || || | Sbjct 744698 TCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGATTTCACGTTATCGATCGTATCGGAA 744639 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| ||||| ||||| ||||| || || | || ||||| || || |||||| Sbjct 744638 GACTCTACCTCCAACGTGATAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTGCATT 744582 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68284 TATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTT 68343 ||||||| | |||||||||||| || ||||||||||| || || || | || |||| Sbjct 743362 TATAATCACTCAATGTCCTCCCATCCTCCAACTGCTTCCCAGCAAAAATCAACCTCTGTT 743303 Query 68344 GGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG 68403 | || |||||||| ||||| || ||||||||||||| ||||| ||||| || |||| Sbjct 743302 GATCAGGTGGAATACCTTCTTTATCTTGAATCTTTGATTTGACATTATCGATCGTATCTG 743243 Query 68404 CTGATTCTACTTCCAAGGTGATGGT 68428 |||||| ||||| | |||||| || Sbjct 743242 ATGATTCGACTTCGAGGGTGATTGT 743218 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| ||||| || | || || || | || || || ||||| ||||| | |||||| Sbjct 744218 TAATCAGAGAGAGTACGACCGTCCTCGAGTTGTTTACCCGCGAAGATGAGACGTTGTTGA 744159 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || ||||| || || ||||||||||||||||| | ||||||| ||||| || || | | Sbjct 744158 TCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTATCGATAGTATCAGAT 744099 Query 68406 GATTCTACTTCCAAGGTGATGGT 68428 ||||| ||||| | ||||||||| Sbjct 744098 GATTCAACTTCGAGGGTGATGGT 744076 >seq5 Length=1209326 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || ||||| || |||||||| ||||| || Sbjct 1116723 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAATCCGAT 1116782 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||| || | |||||| || ||||| || | || ||||| || ||||| Sbjct 1116783 AGAGTCCTACCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGTTGATCAGGTGGG 1116842 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1116843 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACC 1116902 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | ||||||||| || || || || Sbjct 1116903 TCGAGGGTGATGGTCTTACCTGTAAG 1116928 >seq9 Length=1075742 Score = 129 bits (142), Expect = 1e-24 Identities = 212/303 (70%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 || ||||| || |||| || || | || | |||||| || || ||||||||||| || Sbjct 361977 CCATTGCAAGCATACATTCCGTACGATTCCCTGTAGTTGACAACGATCCAGTATGCATAC 362036 Query 268487 ATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATT 268546 | |||||| ||| | |||||| | |||| || || || || |||||| || Sbjct 362037 AGCTTTGCGACTCCATACGGACTCCTCGGATAAAACGGTGTAGTCTCAGATTGAGGTATC 362096 Query 268547 TCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGT-TTTTTC 268605 || | || |||||| |||| || || || || ||||||||||| | || || |||||| Sbjct 362097 TCCTGAACCTTGCCATAGAGTTCCGACGTAGAAGCTTGGTAGAA-TCTGACGTGTTTTTC 362155 Query 268606 GAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGC 268665 | ||||| |||| || || ||||| | ||||| || || | ||||| || || || Sbjct 362156 CAAGCCGCATGTTCGAATAGCATCGAGGACTCGAAGTGTGCCTAATCCATCAACATCTGC 362215 Query 268666 TGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAAC 268725 ||| ||||| | ||| ||||| || || | ||| || || || || ||||| || | Sbjct 362216 TGTGTACTCGGCCATTTCGAAGGATACTTTGACGTGAGATTGTGCACCGAGGTTGTAGAA 362275 Query 268726 CTC 268728 ||| Sbjct 362276 CTC 362278 >seq4 Length=1188950 Score = 120 bits (132), Expect = 6e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| ||||||||||||| || |||||||| | ||| ||| || ||| |||||| Sbjct 817173 AGGAAGTCAGAGTCGTGGGAGACGATGATGGAGGTACA-GTTGGTGAGGGAAGTGAGGTA 817231 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 ||||||||| | |||||| || |||| || || ||||| ||||| || || || Sbjct 817232 GTCGATGAGCCAGGTGACGTTGACAACATCCAAATGATTGGTAGGCTCGTCGAGGAGAAG 817291 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || ||||| | | | |||||| || | ||||| |||||||| ||||| || ||||| Sbjct 817292 AATATCAGCCTTGAACAAGATGGCTCGAGCGAGAGCGAGCTTCATCTTCCAACCACCGGA 817351 Query 225628 CAGGGAGCCGATTGA 225642 ||||| ||||| || Sbjct 817352 GAGGGAACCGATCGA 817366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621489897880