Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 113 3e-20 seq5 96.9 3e-15 >seq8 Length=1050647 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || || || ||||| ||||| || || | | || ||| Sbjct 744569 CGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGACCG 744510 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || || | ||||| || |||||||| || || ||||| || ||| Sbjct 744509 TCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTG 744450 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || ||| | || | || || ||| || ||||| ||||| || Sbjct 744449 TCTTG-AATCTTGGACTTTACATTATCGATCGTATCGGAAGACTCGACTTCGAGAGTGAT 744391 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || || || ||||| Sbjct 744390 GGTTTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 744355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || |||||| | || | | |||||||| || ||||||||||| || Sbjct 744738 ATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGTGGAATACCCTCCTT 744679 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||| || | || | || || ||| ||||| || | || | Sbjct 744678 GTCTTG-AATCTTGGATTTCACGTTATCGATCGTATCGGAAGACTCTACCTCCAACGTGA 744620 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || || ||||| ||||| || |||||| Sbjct 744619 TAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTGCATT 744582 >seq5 Length=1209326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || || || || || ||||| ||||||| | || | | Sbjct 1116734 ACGGAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAATCCGATAGAGTCCTACC 1116793 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || |||||||| | ||||| || || ||||| || || |||||||| || Sbjct 1116794 ATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGTTGATCAGGTGGGATACCCTCCTT 1116853 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| ||| || || || || || || Sbjct 1116854 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1116913 Query 29751 AGTTTTGCCAGT-----TAAGGTTTT 29771 || || || || ||||||||| Sbjct 1116914 GGTCTTACCTGTAAGACTAAGGTTTT 1116939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218829106139