Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-19 seq16 86.0 1e-11 >seq1 Length=2435598 Score = 113 bits (124), Expect = 1e-19 Identities = 349/537 (65%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || || ||||| || |||||||| |||||| |||| ||| ||| | || || Sbjct 130741 ATGAAGGAGGATTCCATCGAAGGTATCTATGATACTCTCAAAACTTGTGCCATGATCTCC 130800 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || | | || || || ||| | || |||| | ||||| | || || | | ||| Sbjct 130801 AAGACAGCAGGTGGTATCGGTCTCAACATTCACAACATTCGTGCCAAGGGTTCTTACATC 130860 Query 110658 GCAACAGCGAA-GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 || | || |||| || ||| | | | ||||| ||| | ||| | | ||| || Sbjct 130861 GCTGGTACAAACGGGTACTCGAACGGTA-TCGTTCCTATGCTTCGAGCTTACGACGCAAC 130919 Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGA 110773 || ||| || ||||||||||||| | || || | ||||| || || ||||| Sbjct 130920 CGCTCGATACGTCGATCAAGGTGGTAACAAGCGACCAGGTGCTTTTGCCATTTACCTCGA 130979 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 || ||||| | || | || || || | || || || |||||||| || ||||| Sbjct 130980 GCCATGGCACGCCGACGTTTTCGACTTTATCGATCTACGAAAAAATCACGGTAAAGAAGA 131039 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | |||| ||||||||||| || || ||||||| | ||| | |||||| ||||| Sbjct 131040 AGTTCGAGCTCGTGATTTATTCTACGCGTTGTGGATCCCGGATCTTTTCATGCGTCGTGT 131099 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 |||| |||| |||| || | |||||||| ||| | |||||| || | ||| Sbjct 131100 AGAAGAGGATGGAGAGTGGGCTTTGATGTGTCCACATGAGTGTCCTGGATTAGCCGATTG 131159 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 ||||||| | || || || || ||||| ||| || | | ||||||| | || Sbjct 131160 TCATGGAAAGGCTTTCGATGAACTATACGAGTCATACGAGAGGCAGGGCAAGTACAGGAA 131219 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070 || ||| ||| |||| |||| | || || ||| |||| ||| ||||| Sbjct 131220 GATGATCAAAGCGCAAAAACTATGGTACGCTATTCTCGAAGCACAGACTGAGACTGG 131276 >seq16 Length=848844 Score = 86.0 bits (94), Expect = 1e-11 Identities = 177/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 || || ||||||||| ||||| ||| | ||||| |||| ||||| || ||| | ||| Sbjct 570019 GACGGCTTGAAACCTGGCCAGCGCAAGGTCCTATTCGGTTGCTTCAAGAGGAAACTTGTA 570078 Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994 || || || ||||| || | || ||||| ||||| || | | ||| |||||| Sbjct 570079 AAAGAGATCAAAGTTGCGCAACTTGCCGGTTACGTTTCTGAGAAGACTTCTTACCATCAC 570138 Query 279995 GGTGAAGCGTCTCTTCAAGGTG-CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAA 280053 || ||| | | || | || |||| || ||||| || ||| || ||| || Sbjct 570139 GGCGAACAGAGT-TTGACCATGACTATCGTCGGTCTCGCTCAAACCTTCGTGGGAAGCAA 570197 Query 280054 CAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGA 280113 |||| | || |||| || || |||||||| ||| ||||| ||| |||||||| Sbjct 570198 CAACATTAACTTGCTCGACCCCAACGGTCAATTCGGTACTCGTGCTCAGGGAGGAAAAGA 570257 Query 280114 TCATGGTAGTGCTCGTTACAT 280134 || |||||||||||||| Sbjct 570258 CGCTGCCAGTGCTCGTTACAT 570278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811598722919