Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03-
01] 79 sequences; 24,117,869 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 3e-36
>seq1
Length=2435598
Score = 167 bits (184), Expect = 3e-36
Identities = 320/464 (69%), Gaps = 6/464 (1%)
Strand=Plus/Plus
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| |||||||| ||||| |||||| || | ||| || ||||| | |||||||||
Sbjct 130687 CTTTTCAACGCGGGTACACCTCACCCACAACTTTCGTCATGTTTCCTCATCGCGATGAAG 130746
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|| || || ||||| || ||||| || || ||||| |||||| |||||||||
Sbjct 130747 GAGGATTCCATCGAAGGTATCTATGATACTCTCAAAACTTGTGCCATGATCTCCAAGACA 130806
Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472
| |||||||||||| || || | | | ||| | ||||| || || | ||| ||
Sbjct 130807 GCAGGTGGTATCGGTCTCAACATTCAC-AACATTCGTGCCAAGGGTTCTTACATCGCTGG 130865
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|| ||||| | | | || ||||| |||||||| || | | | || || || ||
Sbjct 130866 TACAAACGGGTACTCGAACGGTATCGTTCCTATGCTTCGAGCTTACGACGCAACCGCTCG 130925
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591
|||||| | || |||||| ||||| | ||| | | || ||||| ||||||||||| |
Sbjct 130926 ATACGTCGATCAAGGTGGTAACAAGCGACCAGGTG-CTTTTGCCATTTACCTCGAGCCAT 130984
Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651
||||||||||| || | || ||| |||| || || ||||| ||| | ||||| | |
Sbjct 130985 GGCACGCCGACGTTTTCGACTTTATCGATCTACGAAAAAATCACGGTAAAGAAGAAGTTC 131044
Query 53652 GCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
| ||||| | || ||| || ||||||| ||||| || ||||||| || ||
Sbjct 131045 GAGCTCGTGATTTATTCTAC-GCGTTGTGGATCCCGGATCTTTTCATGCGTCGTGTAGAA 131103
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754
|||| | |||||| ||||||| || | ||||| || ||
Sbjct 131104 GAGGATGGAGAGTGGGCTTTGATGTGTCCACATGAGTGTCCTGG 131147
Score = 123 bits (136), Expect = 3e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 55736 ATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGT 55795
|||||| |||||| |||||||| |||||| | || ||| | ||| || |||
Sbjct 132271 ATTTACAAGACGGTCTGGGAGATCAGCCAGAAGGCCATCATCGACCTCGCTGCCGACCGT 132330
Query 55796 GGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC-ACTGGC 55854
||||| | |||||||||||||| || || |||||| | || ||||| || | ||
Sbjct 132331 GGTGCCTTTATCGACCAGTCCCAATCGCTCAACATCCACTTGACCAATCCATCTCCAGGT 132390
Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914
||| | | |||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct 132391 CAA-CTCACCTCGATGCACTTCTACGGTTGGAAGAAGGGACTCAAAACCGGCATGTACTA 132449
Query 55915 TCTGCGGACCCG 55926
||| || || ||
Sbjct 132450 TCTCCGAACTCG 132461
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546
|||||||| || || ||||| ||||| |||||||||||| |||||||| |||| ||
Sbjct 131951 AACTCCCTCCTGGTCGCGCCGATGCCTACCGCGTCGACGTCTCAGATCCTGGGATGGAAT 132010
Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTA 55578
||| |||||||| ||||| | |||||||||
Sbjct 132011 GAGTGCTTCGAGCCTTACACCAGCAACATCTA 132042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215459624200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |