Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03-
01] 79 sequences; 24,117,869 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq8 176 9e-39
seq5 129 1e-24
seq9 102 2e-16
seq34 87.8 4e-12
seq31 87.8 4e-12
>seq8
Length=1050647
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| ||| | || || ||||||||||||||||| |
Sbjct 744581 CCACCACGAAGTCGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCGGAG 744522
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || || || |||||||| ||||| || ||||| | || || ||| ||
Sbjct 744521 AGAGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGAGGG 744462
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| ||||||||||| ||||| | ||||| ||||||| || || |||| ||||||
Sbjct 744461 ATACCTTCCTTGTCTTGAATCTTGGACTTTACATTATCGATCGTATCGGAAGACTCGACT 744402
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| || ||||| ||||||||||| ||||| || |||||
Sbjct 744401 TCGAGAGTGATGGTTTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 744355
Score = 125 bits (138), Expect = 1e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981
|||| |||| || || || || ||||| |||||||| || || ||||| | ||||||||
Sbjct 744220 TGTAATCAGAGAGAGTACGACCGTCCTCGAGTTGTTTACCCGCGAAGATGAGACGTTGTT 744161
Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041
| ||| || ||||||||||||||||| ||||| | || ||| |||||||||| || |
Sbjct 744160 GATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTATCGATAGTATCAG 744101
Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCT 283068
| | ||| |||||||| ||||| ||||
Sbjct 744100 ATGATTCAACTTCGAGGGTGATGGTCT 744074
Score = 120 bits (132), Expect = 6e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981
|||| |||| | || | |||||| || || || || || |||||||| | ||| || |
Sbjct 744760 TGTAATCAGACAATGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCT 744701
Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041
| ||| |||||||||||||||||||| ||||| | ||| ||| ||||||| || || |
Sbjct 744700 GATCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGATTTCACGTTATCGATCGTATCGG 744641
Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| || || || | ||||| || || || |||||||| || || || || ||||||
Sbjct 744640 AAGACTCTACCTCCAACGTGATAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTGCATT 744582
Score = 104 bits (114), Expect = 5e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
|||||||| | || ||||| ||||| ||||| | ||||| ||| |||||||| ||
Sbjct 743342 CCATCCTCCAACTGCTTCCCAGCAAAAATCAACCTCTGTTGATCAGGTGGAATACCTTCT 743283
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
|| ||||| ||||||| ||| || ||||||| || || || | |||||||||||| |||
Sbjct 743282 TTATCTTGAATCTTTGATTTGACATTATCGATCGTATCTGATGATTCGACTTCGAGGGTG 743223
Query 283062 ATCGTCT 283068
|| ||||
Sbjct 743222 ATTGTCT 743216
>seq5
Length=1209326
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| ||| | || || || ||||||||||| || |
Sbjct 1116722 ACCACCACGAAGACGGAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAATCCGA 1116781
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | |||||||| || || || || || |||||||| | ||||| ||| ||
Sbjct 1116782 TAGAGTCCTACCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGTTGATCAGGTGG 1116841
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 1116842 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAAC 1116901
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| |||||||| ||
Sbjct 1116902 CTCGAGGGTGATGGTCTTACCTGT 1116925
>seq9
Length=1075742
Score = 102 bits (112), Expect = 2e-16
Identities = 126/169 (75%), Gaps = 5/169 (3%)
Strand=Plus/Minus
Query 43974 TCGGATT-TGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAA 44032
|| |||| | |||||| || || ||||| | || || |||||||||||||| ||||||
Sbjct 362145 TCAGATTCTACCAAGCTTCTACGTCGGAACTCTATGGCAAGGTTCAGGAGATACCTCAAT 362086
Query 44033 CAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATT 44092
| || | || ||||||||||| ||||||| ||||| || || ||||| ||||| || |
Sbjct 362085 CTGAGACTACACCGTTTTATCCGAGGAGTCCGTATGGAGTCGCAAAGCTGTATGCATACT 362026
Query 44093 GGAT--TTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAAT 44139
|||| |||| || || | || ||||| || |||| | ||| |||
Sbjct 362025 GGATCGTTGT--CAACTACAGGGAATCGTACGGAATGTATGCTTGCAAT 361979
>seq34
Length=15758
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/151 (74%), Gaps = 4/151 (3%)
Strand=Plus/Minus
Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042
||| || || || |||||| | ||||| |||| |||| || || | || | |||
Sbjct 15033 CCAGGCTTCCACGTCGGAGCTCTACGGTCAGGTCGTCGAGACGCCCCAGAGTGAGACGAC 14974
Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGAT--TTGT 44100
||||||||||| |||||||||||||||| || ||||| ||||| || ||||| | ||
Sbjct 14973 ACCGTTTTATCCGAGGAGTCCATATGGTGTCGCCAAGCTGTATGCGTACTGGATCGTCGT 14914
Query 44101 AAAAATTATCGCGAGTCGTATGGGATGTTCG 44131
|| || | |||||||| || |||||||
Sbjct 14913 --CAACTACAGGGAGTCGTACGGCATGTTCG 14885
>seq31
Length=21528
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/151 (74%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042
||| || || || |||||| | ||||| |||| |||| || || | || | |||
Sbjct 3721 CCAGGCTTCCACGTCGGAGCTCTACGGTCAGGTCGTCGAGACGCCCCAGAGTGAGACGAC 3780
Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGAT--TTGT 44100
||||||||||| |||||||||||||||| || ||||| ||||| || ||||| | ||
Sbjct 3781 ACCGTTTTATCCGAGGAGTCCATATGGTGTCGCCAAGCTGTATGCGTACTGGATCGTCGT 3840
Query 44101 AAAAATTATCGCGAGTCGTATGGGATGTTCG 44131
|| || | |||||||| || |||||||
Sbjct 3841 --CAACTACAGGGAGTCGTACGGCATGTTCG 3869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738140503666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |