Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001600875.1_202016-03- 01] 79 sequences; 24,117,869 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 129 1e-24 seq8 123 6e-23 >seq5 Length=1209326 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| ||||| || || |||||||||||||| || || ||||||||||| || ||||| Sbjct 1116929 TCTTACAGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAA 1116870 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || ||||| || || || || | | |||||||| || Sbjct 1116869 GTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAGAGGTTGATCTTCGCTGG 1116810 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 || |||||||| ||||| |||||||| | ||||| ||| |||| || || || || || Sbjct 1116809 CAAGCAGCTCGAGGATGGTAGGACTCTATCGGATTACAACATCCAGAAGGAGTCTACTCT 1116750 Query 178121 GCAT 178124 ||| Sbjct 1116749 TCAT 1116746 >seq8 Length=1050647 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | ||||| ||||| ||||| | ||||| || || || Sbjct 744586 CAAATCTTTGTCAAAACTTTGACAGGGAAAACTATCACGTTGGAGGTAGAGTCTTCCGAT 744645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 744646 ACGATCGATAACGTGAAATCCAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAG 744705 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || |||||||| || ||||| |||||||||||||| ||||| Sbjct 744706 CGTCTTATCTTTGCTGGAAAGCAGCTCGAAGATGGCAGGAC 744746 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||||||||| || ||| || || || ||||| |||||||| |||||||| Sbjct 744076 ACCATCACCCTCGAAGTTGAATCATCTGATACTATCGATAACGTCAAGTCCAAGATTCAA 744135 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| || || || ||||| || |||||||| || ||||| ||||| Sbjct 744136 GACAAGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCGGGTAAACAACTCGAG 744195 Query 178074 GATGGAAGGACTCTTGCCGATTA 178096 || || | ||||| | ||||| Sbjct 744196 GACGGTCGTACTCTCTCTGATTA 744218 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| |||||||| || || ||||| || || || ||||| || ||||||||||| || | Sbjct 545140 AGATCCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTCATCTTCGCCGGCAAGC 545199 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 |||||||||||||| | ||||| |||| || Sbjct 545200 AGCTCGAAGATGGACGAACTCTCTCCGACTA 545230 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||||||||| || ||| ||||| || ||||| || |||||| ||||||||| Sbjct 743218 ACAATCACCCTCGAAGTCGAATCATCAGATACGATCGATAATGTCAAATCAAAGATTCAA 743277 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || |||||||| || || || || || || | | || || || || || ||| | || Sbjct 743278 GATAAAGAAGGTATTCCACCTGATCAACAGAGGTTGATTTTTGCTGGGAAGCAGTTGGAG 743337 Query 178074 GATGGAAGGAC 178084 ||||| ||||| Sbjct 743338 GATGGGAGGAC 743348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729981598326