Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001712455.1_202016-08- 24] 156 sequences; 23,185,503 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 7e-15 seq12 93.3 9e-14 >seq19 Length=542337 Score = 96.9 bits (106), Expect = 7e-15 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| ||| | |||| | |||| || |||||| || || Sbjct 176839 GGTCCCAACGGTTCCGGAAAGTCCACCTTGGTCAAGCTTTTGACCGGTGAGACCGAGCCC 176780 Query 280239 A--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | ||| | | |||||||| |||||| || || | |||||| ||||||||| Sbjct 176779 AACCTCGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTTATCGGTTACGTTGCTCAGCAC 176720 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||| || |||| || || | | ||||| |||||| Sbjct 176719 GCTTTCCACCACATCGATCACCATCTCGACAAAACCCCGCTCGACTACATGTTGTGGCGA 176660 Query 280356 TA 280357 || Sbjct 176659 TA 176658 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| || ||| |||| ||||| | | Sbjct 177322 GGTTCCCTCTCCGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGAGCCATCTTGTTCAAG 177263 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || ||| |||| || || || ||||| ||||| || |||| |||||| ||||| Sbjct 177262 GCTGATATCCTTCTCCTCGACGAGCCTACCAATCATTTGGATGTTGTCAACGTCACCTGG 177203 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| || || | || | | ||| |||| ||||| ||||||||| Sbjct 177202 CTCATCGACTACCTCACTTCCCTCACCAACTGTACCTCCATCATCGTCTCCCACGACTCT 177143 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 177142 GACTTCCT 177135 >seq12 Length=685287 Score = 93.3 bits (102), Expect = 9e-14 Identities = 270/411 (66%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 218466 CTTCCAGCCCGGAAACCAGTTGGACCAGTCGAAGACCAACA--TCCCCGTCCCTGACTTC 218523 ||| |||||||||| | | | ||||| ||| | ||| |||| || |||||| Sbjct 584484 CTTTCAGCCCGGAACCTACCTTGACCA--CGATATCAGACAGGTCCCTCTCAAGGACTTC 584541 Query 218524 ATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTG 218583 ||| |||||||||| || || |||||| | || || || || || || Sbjct 584542 ATCAACAAGGAGCTAATCCTCTTCTCGATGGCCGACAATATCCGATCCATCCCGTCAGTC 584601 Query 218584 GTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG 218643 | || ||| | || || ||||| ||| |||| || | |||||| |||| || Sbjct 584602 GCTGACGGCTTGAAACCTGGCCAGCGCAAGGTCCTATTCGGTTGCTTCAAGAGGAAACTT 584661 Query 218644 GTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCAT 218703 || | || || || || || || || | ||||| || || || | || |||||| Sbjct 584662 GTAAAGGAGATCAAAGTTGCGCAACTTGCCGGTTACGTTTCTGAGAAGACTTCTTACCAT 584721 Query 218704 CACGGTGAGCAGAGTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCAG 218762 ||||| || |||||| || | || | || || || | || || || |||||| || Sbjct 584722 CACGGCGAACAGAGTTTG-ACCATGACTATCGTCGGTCTCGCTCAAACCTTTGTGGGAAG 584780 Query 218763 TAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAA 218822 |||||||| |||||||| |||||||||||| || ||| ||||| ||| ||||| Sbjct 584781 CAACAACATCAACTTGCTCGACCCCAACGGTCAATTCGGTACTCGTGCTCAGGGAGGAAA 584840 Query 218823 GGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || |||| ||| | || || ||||| || || | | | |||| || Sbjct 584841 AGACGCTGCTAGTGCTCGTTACATTTTTACCAACGTGCCACGCATGACTCG 584891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834745611196