Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001712455.1_202016-08- 24] 156 sequences; 23,185,503 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-16 >seq1 Length=1746732 Score = 104 bits (114), Expect = 2e-16 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | || ||| |||||| || |||||||||||||| |||||||| || ||| Sbjct 1066359 TAATCAGACAATGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGA 1066418 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-T 480715 ||||| ||||| || ||||||||||||||||| ||| ||| || || ||||| | Sbjct 1066419 TCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGATTTCACATTATCGATCGTATCGGAA 1066478 Query 480716 GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||| || |||||||| || || | ||| || || || ||||| Sbjct 1066479 GACTCTACCTCCAA-CGTGATAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTG 1066531 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || | |||||||||| || || | || || || | ||||| Sbjct 1066541 ACGAAGTCGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGAGT 1066600 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||| ||||| || || || ||||| | | || ||||||||||| || || Sbjct 1066601 ACGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGAGGGATACC 1066660 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| || || || || ||||| | | | | ||| | Sbjct 1066661 TTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATCGTATCGGAAGACTCGA-CTTCGA 1066719 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || |||||||| || || | |||||| ||||| ||||| Sbjct 1066720 GAGTGATAGTTTTCCCTGTCAAAGTCTTGACGAAGATTTG 1066759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172508403088