Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solicoccozyma_20terricola_20[genbank_20GCA_5F001712455.1_202016-08- 24] 156 sequences; 23,185,503 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq13 93.3 3e-14 >seq1 Length=1746732 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || || || ||||| ||||| || || | | || ||| Sbjct 1066548 CGGAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGACCG 1066607 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || || | ||||| || |||||||| || || ||||| || ||| Sbjct 1066608 TCTTCGAGTTGTTTACCGGCGAAAATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTG 1066667 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || || | || | || || ||| || ||||| ||||| || Sbjct 1066668 TCTTG-AATCTTGGACTTTACGTTATCGATCGTATCGGAAGACTCGACTTCGAGAGTGAT 1066726 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || || || || || || || ||||| Sbjct 1066727 AGTTTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 1066762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || |||||| | || | | |||||||| || ||||||||||| || Sbjct 1066379 ATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGTGGAATACCCTCCTT 1066438 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||| ||| | || | || || ||| ||||| || | || | Sbjct 1066439 GTCTTG-AATCTTGGATTTCACATTATCGATCGTATCGGAAGACTCTACCTCCAACGTGA 1066497 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || || ||||| ||||| || |||||| Sbjct 1066498 TAGTTTTCCCTGTCAAAGTTTTGACAAAGATTTGCATT 1066535 >seq13 Length=658505 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || || || || || ||||| ||||||| | || | | Sbjct 563820 ACGGAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAATCCGATAGAGTCCTACC 563879 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || ||||| | ||||| || || ||||| || || |||||||| || Sbjct 563880 ATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGTTGATCAGGTGGGATACCCTCCTT 563939 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| ||| || || || || || || Sbjct 563940 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 563999 Query 29751 AGTTTTGCCAGT-----TAAGGTTTT 29771 || || || || ||||||||| Sbjct 564000 GGTCTTACCTGTAAGACTAAGGTTTT 564025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218467601996